Detailed information of deep learning profile BP000036.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM20000 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000036.1
Cell line/tissue: GM20000
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.05 0.18 0.12 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4224 3691 3452 5081 6383 4673 3499 4315 3478 3935 4583 4646 4911 4853 4260 2773 3999 5235 1963 631 12130 1383 2972 14966 298 6970 1085 297 434 2528 7592 1729 2562 6793 3231 5570 4079 4878 4321 3961 4852 6028 4044 4695 5043 5389 4938 4859 4825 4800 ]
C [ 4349 3306 4824 5691 3920 3666 3161 4519 7193 6267 5760 5369 4915 4338 4854 5869 3928 2185 13875 17443 1213 10075 6820 617 131 168 756 117 662 13892 922 9791 6249 4535 3698 3511 3338 5029 5897 7267 6007 3995 5045 4435 4250 4165 4350 4516 4699 4746 ]
G [ 4734 6458 6115 3522 4447 4312 4252 4247 3156 3516 4139 4281 4192 3909 4528 2939 6217 7884 1524 352 2604 6574 1708 1793 18063 11363 10200 18047 16100 604 9218 5391 1661 5345 4985 3900 7891 4909 4785 2787 3004 4853 4933 5015 4787 4208 4230 5091 4981 4799 ]
T [ 5377 5229 4293 4390 3934 6033 7772 5603 4857 4966 4202 4388 4666 5584 5042 7103 4540 3380 1322 258 2737 652 7184 1308 192 183 6643 223 1488 1660 952 1773 8212 2011 6770 5703 3376 3868 3681 4669 4821 3808 4662 4539 4604 4922 5166 4218 4179 4339 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 -0.01 -0.03 -0.02 0.02 -0.02 -0.04 0.04 -0.02 -0.02 0.09 -0.06 0.05 -0.06 -0.05 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.04 -0.01 0.12 0.18 -0.03 0.11 0.05 0.00 -0.02 -0.07 0.01 -0.03 -0.02 0.15 -0.03 0.08 0.05 0.04 0.02 0.02 0.01 0.02 ]
G [ 0.02 0.02 0.02 0.02 0.00 0.05 0.06 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.19 0.14 0.11 0.19 0.14 -0.02 0.15 0.05 -0.01 0.03 0.03 0.00 0.04 0.01 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.07 0.06 -0.03 -0.05 -0.08 0.03 -0.05 0.01 -0.03 -0.07 -0.02 0.03 -0.05 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 434

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 276

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages