Detailed information of deep learning profile BP000036.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM20000 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000036.1
Cell line/tissue: GM20000
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.12 0.18 0.05 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4339 4179 4218 5166 4922 4604 4539 4662 3808 4821 4669 3681 3868 3376 5703 6770 2011 8212 1773 952 1660 1488 223 6643 183 192 1308 7184 652 2737 258 1322 3380 4540 7103 5042 5584 4666 4388 4202 4966 4857 5603 7772 6033 3934 4390 4293 5229 5377 ]
C [ 4799 4981 5091 4230 4208 4787 5015 4933 4853 3004 2787 4785 4909 7891 3900 4985 5345 1661 5391 9218 604 16100 18047 10200 11363 18063 1793 1708 6574 2604 352 1524 7884 6217 2939 4528 3909 4192 4281 4139 3516 3156 4247 4252 4312 4447 3522 6115 6458 4734 ]
G [ 4746 4699 4516 4350 4165 4250 4435 5045 3995 6007 7267 5897 5029 3338 3511 3698 4535 6249 9791 922 13892 662 117 756 168 131 617 6820 10075 1213 17443 13875 2185 3928 5869 4854 4338 4915 5369 5760 6267 7193 4519 3161 3666 3920 5691 4824 3306 4349 ]
T [ 4800 4825 4859 4938 5389 5043 4695 4044 6028 4852 3961 4321 4878 4079 5570 3231 6793 2562 1729 7592 2528 434 297 1085 6970 298 14966 2972 1383 12130 631 1963 5235 3999 2773 4260 4853 4911 4646 4583 3935 3478 4315 3499 4673 6383 5081 3452 3691 4224 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.05 0.03 -0.02 -0.07 -0.03 0.01 -0.05 0.03 -0.08 -0.05 -0.03 0.06 -0.07 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.03 0.03 -0.01 0.05 0.15 -0.02 0.14 0.19 0.11 0.14 0.19 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.06 0.05 0.00 0.02 0.02 0.02 0.02 ]
G [ 0.02 0.01 0.02 0.02 0.04 0.05 0.08 -0.03 0.15 -0.02 -0.03 0.01 -0.07 -0.02 0.00 0.05 0.11 -0.03 0.18 0.12 -0.01 0.04 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.05 -0.06 0.05 -0.06 0.09 -0.02 -0.02 0.04 -0.04 -0.02 0.02 -0.02 -0.03 -0.01 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 434

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 276

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages