Detailed information of deep learning profile BP000034.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM13976 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000034.1
Cell line/tissue: GM13976
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.17 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4451 4457 4376 4232 4229 5163 4878 4553 4563 4669 3899 4892 4795 3796 3982 3388 5749 6831 2113 8228 1930 1014 1747 1663 244 6590 215 207 1423 7173 725 2962 285 1436 3346 4589 6822 5021 5552 4757 4412 4392 5028 4834 5538 7462 5930 4009 4423 4392 ]
C [ 4880 4850 4897 4873 5054 4245 4238 4812 5118 4988 4946 3099 2904 4689 5024 7764 3980 4798 5367 1757 5424 9083 803 15681 18110 10125 11450 18058 2003 1813 6582 2766 348 1615 7934 5989 3004 4575 3943 4225 4432 4093 3594 3236 4273 4293 4401 4517 3656 6030 ]
G [ 4810 4580 4645 4750 4567 4307 4270 4227 4395 5015 3938 5950 7047 5999 4985 3444 3543 3819 4578 6175 9618 1130 13490 876 101 789 179 142 650 6668 9948 1315 17356 13686 2316 3962 6014 4817 4406 4846 5222 5658 6202 7067 4613 3343 3748 3908 5518 4732 ]
T [ 4612 4866 4835 4898 4903 5038 5367 5161 4677 4081 5970 4812 4007 4269 4762 4157 5481 3305 6695 2593 1781 7526 2713 533 298 1249 6909 346 14677 3099 1498 11710 764 2016 5157 4213 2913 4340 4852 4925 4687 4610 3929 3616 4329 3655 4674 6319 5156 3599 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.05 -0.02 -0.08 -0.03 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.01 ]
C [ 0.02 0.04 0.00 0.03 0.03 -0.00 0.05 0.14 -0.02 0.13 0.17 0.10 0.13 0.18 0.03 -0.01 0.05 0.08 -0.03 -0.02 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.14 -0.03 -0.04 -0.00 -0.07 -0.02 0.00 0.05 0.11 -0.03 0.18 0.11 -0.01 0.04 0.06 0.02 0.02 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.06 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages