Detailed information of deep learning profile BP000034.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM13976 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000034.1
Cell line/tissue: GM13976
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.17 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3599 5156 6319 4674 3655 4329 3616 3929 4610 4687 4925 4852 4340 2913 4213 5157 2016 764 11710 1498 3099 14677 346 6909 1249 298 533 2713 7526 1781 2593 6695 3305 5481 4157 4762 4269 4007 4812 5970 4081 4677 5161 5367 5038 4903 4898 4835 4866 4612 ]
C [ 4732 5518 3908 3748 3343 4613 7067 6202 5658 5222 4846 4406 4817 6014 3962 2316 13686 17356 1315 9948 6668 650 142 179 789 101 876 13490 1130 9618 6175 4578 3819 3543 3444 4985 5999 7047 5950 3938 5015 4395 4227 4270 4307 4567 4750 4645 4580 4810 ]
G [ 6030 3656 4517 4401 4293 4273 3236 3594 4093 4432 4225 3943 4575 3004 5989 7934 1615 348 2766 6582 1813 2003 18058 11450 10125 18110 15681 803 9083 5424 1757 5367 4798 3980 7764 5024 4689 2904 3099 4946 4988 5118 4812 4238 4245 5054 4873 4897 4850 4880 ]
T [ 4392 4423 4009 5930 7462 5538 4834 5028 4392 4412 4757 5552 5021 6822 4589 3346 1436 285 2962 725 7173 1423 207 215 6590 244 1663 1747 1014 1930 8228 2113 6831 5749 3388 3982 3796 4795 4892 3899 4669 4563 4553 4878 5163 4229 4232 4376 4457 4451 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.06 -0.06 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.02 0.02 0.06 0.04 -0.01 0.11 0.18 -0.03 0.11 0.05 0.00 -0.02 -0.07 -0.00 -0.04 -0.03 0.14 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.02 -0.03 0.08 0.05 -0.01 0.03 0.18 0.13 0.10 0.17 0.13 -0.02 0.14 0.05 -0.00 0.03 0.03 0.00 0.04 0.02 ]
T [ -0.01 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.08 -0.02 -0.05 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages