Detailed information of deep learning profile BP000033.1

  1. Home
  2. Deep Learning Profile > BP000033.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000033.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.17 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.09 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4203 5382 6406 5256 4119 4903 4187 4438 4989 5058 5064 5269 4753 3606 4741 5736 2556 1229 11697 2076 3733 15215 520 6423 2012 454 856 3698 7398 2125 3393 6845 3722 5679 4480 5292 4742 4551 5143 6201 4560 5220 5524 5513 5313 5339 5353 5369 5195 5049 ]
C [ 5330 6185 4761 4591 4147 5096 7732 6979 6128 5783 5565 5093 5654 6753 4873 2944 14522 18658 1949 10027 7325 773 187 218 840 191 1527 13794 1893 10515 6577 5166 4553 4266 4206 5533 6375 7488 6280 4702 5590 5078 4839 5013 5057 5196 5231 5107 5137 5223 ]
G [ 6553 4408 5082 4977 4979 4961 3937 4212 4716 5112 5056 4601 5196 3701 6373 8382 2154 584 3107 7691 2454 2816 19844 13930 11353 19821 16578 1221 10139 5457 2303 6006 5377 4721 8226 5616 5513 3836 4034 5476 5748 5569 5498 5102 5216 5604 5668 5547 5442 5597 ]
T [ 4830 4941 4667 6092 7671 5956 5060 5287 5083 4963 5231 5953 5313 6856 4929 3854 1684 445 4163 1122 7404 2112 365 345 6711 450 1955 2203 1486 2819 8643 2899 7264 6250 4004 4475 4286 5041 5459 4537 5018 5049 5055 5288 5330 4777 4664 4893 5142 5047 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.04 0.04 -0.07 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.02 0.05 0.04 -0.00 0.11 0.18 -0.01 0.12 0.06 0.00 -0.03 -0.07 -0.00 -0.04 -0.03 0.14 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.04 -0.00 0.03 0.18 0.14 0.11 0.19 0.14 -0.01 0.14 0.05 -0.01 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.05 0.06 -0.01 -0.03 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 177

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages