Detailed information of deep learning profile BP000033.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000033.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.09 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.17 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5047 5142 4893 4664 4777 5330 5288 5055 5049 5018 4537 5459 5041 4286 4475 4004 6250 7264 2899 8643 2819 1486 2203 1955 450 6711 345 365 2112 7404 1122 4163 445 1684 3854 4929 6856 5313 5953 5231 4963 5083 5287 5060 5956 7671 6092 4667 4941 4830 ]
C [ 5597 5442 5547 5668 5604 5216 5102 5498 5569 5748 5476 4034 3836 5513 5616 8226 4721 5377 6006 2303 5457 10139 1221 16578 19821 11353 13930 19844 2816 2454 7691 3107 584 2154 8382 6373 3701 5196 4601 5056 5112 4716 4212 3937 4961 4979 4977 5082 4408 6553 ]
G [ 5223 5137 5107 5231 5196 5057 5013 4839 5078 5590 4702 6280 7488 6375 5533 4206 4266 4553 5166 6577 10515 1893 13794 1527 191 840 218 187 773 7325 10027 1949 18658 14522 2944 4873 6753 5654 5093 5565 5783 6128 6979 7732 5096 4147 4591 4761 6185 5330 ]
T [ 5049 5195 5369 5353 5339 5313 5513 5524 5220 4560 6201 5143 4551 4742 5292 4480 5679 3722 6845 3393 2125 7398 3698 856 454 2012 6423 520 15215 3733 2076 11697 1229 2556 5736 4741 3606 4753 5269 5064 5058 4989 4438 4187 4903 4119 5256 6406 5382 4203 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.03 -0.01 0.06 -0.05 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.01 0.05 0.14 -0.01 0.14 0.19 0.11 0.14 0.18 0.03 -0.00 0.04 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.14 -0.03 -0.04 -0.00 -0.07 -0.03 0.00 0.06 0.12 -0.01 0.18 0.11 -0.00 0.04 0.05 0.02 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.07 0.04 -0.04 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 177

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages