Detailed information of deep learning profile BP000032.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM10266 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000032.1
Cell line/tissue: GM10266
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.00 0.01 ]
C [ 0.01 0.01 0.00 0.00 0.13 0.24 0.01 0.09 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.12 0.00 0.04 0.01 0.00 ]
G [ 0.00 -0.01 0.02 0.03 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.25 0.06 0.10 0.21 0.11 0.00 0.05 0.01 -0.00 0.01 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.01 -0.01 -0.00 0.02 -0.01 ]

Frequency matrix

       
A [ 67 63 53 57 52 46 58 45 45 56 50 42 45 57 31 22 28 9 10 80 72 23 38 34 14 30 53 29 70 34 48 16 39 42 14 11 130 7 34 142 5 96 11 6 7 23 76 26 19 53 ]
C [ 29 34 22 33 35 39 24 51 30 45 23 48 48 25 41 89 9 6 103 24 28 28 15 73 105 58 30 63 28 55 58 47 25 31 142 161 9 114 69 6 2 2 2 1 24 115 13 82 59 37 ]
G [ 36 32 62 33 41 39 55 45 48 39 46 38 32 45 59 26 13 152 7 17 40 19 54 24 14 38 68 58 27 21 28 25 75 76 9 1 11 44 6 15 164 68 106 165 119 15 56 49 16 49 ]
T [ 42 45 37 51 46 50 37 33 51 34 55 46 49 47 43 37 124 7 54 53 34 104 67 43 41 48 23 24 49 64 40 86 35 25 9 1 24 9 65 11 3 8 55 2 24 21 29 17 80 35 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.01 -0.04 -0.02 0.04 -0.01 -0.03 0.05 -0.03 -0.01 0.12 -0.07 0.06 -0.09 -0.06 -0.07 -0.02 0.02 -0.03 -0.02 0.03 ]
C [ 0.04 0.02 0.01 0.02 0.07 0.04 -0.01 0.16 0.25 -0.03 0.15 0.05 0.00 -0.03 -0.08 -0.02 -0.05 -0.01 0.17 -0.02 0.09 0.06 0.04 ]
G [ 0.01 0.03 0.02 0.03 -0.00 0.06 0.07 -0.04 -0.04 0.10 0.07 0.00 0.03 0.26 0.18 0.16 0.22 0.16 -0.01 0.17 0.05 -0.01 0.04 ]
T [ -0.00 0.00 0.01 0.01 0.03 -0.01 -0.03 -0.04 -0.10 -0.03 -0.08 0.09 -0.04 -0.06 -0.09 0.04 -0.04 0.01 -0.04 -0.07 -0.01 0.04 -0.04 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 161

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 84

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages