Detailed information of deep learning profile BP000029.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000029.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BSE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.01 0.04 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 6150 5969 6108 7294 6884 6454 6497 6606 5558 6894 6648 5338 5687 4913 8033 9577 2954 11099 2683 1413 2398 2128 246 9619 178 196 1723 10111 957 3962 309 1911 4877 6497 9823 7163 7906 6721 6213 6050 7023 6784 7810 10805 8432 5454 6355 6093 7188 7689 ]
C [ 6051 6261 6416 5312 5266 6083 6390 6325 6132 3620 3336 5843 6181 10056 4918 6014 6746 2050 7242 11144 854 21382 24294 13408 14602 24422 2128 1705 8637 2350 321 1649 9996 7804 3639 5700 4739 5217 5422 5162 4360 3911 5204 5228 5337 5615 4350 7589 8199 5867 ]
G [ 5879 5905 5575 5354 5334 5247 5419 6361 4890 7611 9338 7735 6374 4253 4374 4734 5655 8210 12559 1358 17780 864 50 433 63 34 424 8861 13477 1271 23433 18565 2694 4845 7558 6055 5422 6146 6648 7292 7989 9172 5864 3864 4679 4980 6956 6148 4209 5372 ]
T [ 6892 6837 6873 7012 7488 7188 6666 5680 8392 6847 5650 6056 6730 5750 7647 4647 9617 3613 2488 11057 3940 598 382 1512 10129 320 20697 4295 1901 17389 909 2847 7405 5826 3952 6054 6905 6888 6689 6468 5600 5105 6094 5075 6524 8923 7311 5142 5376 6044 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.03 -0.04 0.03 -0.02 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.02 0.04 -0.05 -0.02 -0.06 -0.03 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.02 0.03 0.00 0.02 0.03 -0.00 0.05 0.13 -0.02 0.13 0.17 0.10 0.13 0.18 0.03 -0.01 0.05 0.06 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.13 -0.02 -0.03 0.01 -0.06 -0.03 0.00 0.05 0.11 -0.01 0.16 0.10 -0.01 0.03 0.04 0.01 0.00 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.03 -0.05 -0.04 -0.06 0.04 -0.04 0.08 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages