Detailed information of deep learning profile BP000029.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000029.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BSE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.04 0.01 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 6044 5376 5142 7311 8923 6524 5075 6094 5105 5600 6468 6689 6888 6905 6054 3952 5826 7405 2847 909 17389 1901 4295 20697 320 10129 1512 382 598 3940 11057 2488 3613 9617 4647 7647 5750 6730 6056 5650 6847 8392 5680 6666 7188 7488 7012 6873 6837 6892 ]
C [ 5372 4209 6148 6956 4980 4679 3864 5864 9172 7989 7292 6648 6146 5422 6055 7558 4845 2694 18565 23433 1271 13477 8861 424 34 63 433 50 864 17780 1358 12559 8210 5655 4734 4374 4253 6374 7735 9338 7611 4890 6361 5419 5247 5334 5354 5575 5905 5879 ]
G [ 5867 8199 7589 4350 5615 5337 5228 5204 3911 4360 5162 5422 5217 4739 5700 3639 7804 9996 1649 321 2350 8637 1705 2128 24422 14602 13408 24294 21382 854 11144 7242 2050 6746 6014 4918 10056 6181 5843 3336 3620 6132 6325 6390 6083 5266 5312 6416 6261 6051 ]
T [ 7689 7188 6093 6355 5454 8432 10805 7810 6784 7023 6050 6213 6721 7906 7163 9823 6497 4877 1911 309 3962 957 10111 1723 196 178 9619 246 2128 2398 1413 2683 11099 2954 9577 8033 4913 5687 5338 6648 6894 5558 6606 6497 6454 6884 7294 6108 5969 6150 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.08 -0.04 0.04 -0.06 -0.04 -0.05 -0.03 0.02 -0.03 -0.02 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.00 0.01 0.04 0.03 -0.01 0.10 0.16 -0.01 0.11 0.05 0.00 -0.03 -0.06 0.01 -0.03 -0.02 0.13 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.03 0.18 0.13 0.10 0.17 0.13 -0.02 0.13 0.05 -0.00 0.03 0.02 0.00 0.03 0.02 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.06 -0.02 -0.05 0.04 -0.02 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.02 0.03 -0.04 0.03 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages