Detailed information of deep learning profile BP000028.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000028.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BQE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.12 0.04 0.03 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4381 3821 3525 5780 7226 5072 3561 4633 3661 4100 5000 5230 5510 5496 4716 2773 4305 5758 1977 403 14585 1119 3178 17285 252 8329 866 257 424 2625 8755 1824 2540 7673 3540 6313 4399 5187 4706 4147 5362 7059 4055 5138 5606 6213 5404 5137 5353 5229 ]
C [ 4738 3443 5170 6311 4144 3597 3047 4792 8393 7047 6528 6022 5201 4355 4878 6318 3958 1945 15706 19534 810 11901 7826 464 72 92 511 49 590 15374 799 10668 7008 4940 3892 3645 3338 5628 6911 8558 6835 3748 5687 4667 4484 4360 4569 4758 5024 5208 ]
G [ 5096 7172 6918 3413 4816 4627 4292 4479 2992 3487 4273 4368 4300 4025 5056 2750 7228 8882 1264 149 2423 6651 1365 1456 19815 11694 11187 19777 17626 540 9877 6070 1736 5708 5419 4151 8881 5363 4689 2438 2669 5397 5447 5518 4998 4254 4432 5810 5413 5252 ]
T [ 6033 5812 4635 4744 4062 6952 9348 6344 5202 5614 4447 4628 5237 6372 5598 8407 4757 3663 1301 162 2430 577 7879 1043 109 133 7684 165 1608 1709 817 1686 8964 1927 7397 6139 3630 4070 3942 5105 5382 4044 5059 4925 5160 5421 5843 4543 4458 4559 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.00 0.07 -0.03 0.05 -0.04 -0.03 -0.03 -0.01 0.03 -0.01 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.03 0.02 -0.01 0.08 0.13 -0.02 0.08 0.03 -0.00 -0.02 -0.04 -0.01 -0.03 -0.02 0.10 -0.03 0.05 0.03 0.02 0.00 0.00 -0.00 0.01 ]
G [ 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.01 0.12 0.08 0.07 0.12 0.09 -0.03 0.09 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.02 0.00 -0.01 -0.01 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.06 0.03 -0.02 0.01 -0.02 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages