Detailed information of deep learning profile BP000028.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000028.1
Cell line/tissue: Ishikawa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BQE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.03 0.04 0.12 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4559 4458 4543 5843 5421 5160 4925 5059 4044 5382 5105 3942 4070 3630 6139 7397 1927 8964 1686 817 1709 1608 165 7684 133 109 1043 7879 577 2430 162 1301 3663 4757 8407 5598 6372 5237 4628 4447 5614 5202 6344 9348 6952 4062 4744 4635 5812 6033 ]
C [ 5252 5413 5810 4432 4254 4998 5518 5447 5397 2669 2438 4689 5363 8881 4151 5419 5708 1736 6070 9877 540 17626 19777 11187 11694 19815 1456 1365 6651 2423 149 1264 8882 7228 2750 5056 4025 4300 4368 4273 3487 2992 4479 4292 4627 4816 3413 6918 7172 5096 ]
G [ 5208 5024 4758 4569 4360 4484 4667 5687 3748 6835 8558 6911 5628 3338 3645 3892 4940 7008 10668 799 15374 590 49 511 92 72 464 7826 11901 810 19534 15706 1945 3958 6318 4878 4355 5201 6022 6528 7047 8393 4792 3047 3597 4144 6311 5170 3443 4738 ]
T [ 5229 5353 5137 5404 6213 5606 5138 4055 7059 5362 4147 4706 5187 4399 6313 3540 7673 2540 1824 8755 2625 424 257 866 8329 252 17285 3178 1119 14585 403 1977 5758 4305 2773 4716 5496 5510 5230 5000 4100 3661 4633 3561 5072 7226 5780 3525 3821 4381 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.01 -0.02 0.03 -0.06 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.01 -0.01 0.00 0.02 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.09 -0.03 0.09 0.12 0.07 0.08 0.12 0.01 -0.01 0.04 0.05 -0.02 -0.02 0.04 0.03 -0.01 0.01 ]
G [ 0.01 -0.00 0.00 0.00 0.02 0.03 0.05 -0.03 0.10 -0.02 -0.03 -0.01 -0.04 -0.02 -0.00 0.03 0.08 -0.02 0.13 0.08 -0.01 0.02 0.03 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.01 0.03 -0.01 -0.03 -0.03 -0.04 0.05 -0.03 0.07 -0.00 -0.02 0.03 -0.02 -0.00 0.02 -0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages