Detailed information of deep learning profile BP000027.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000027.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BPJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.07 0.12 0.04 0.06 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5297 5008 5208 5635 5488 5322 5324 5447 4917 5845 5507 4601 4840 4376 6557 7470 3185 9006 2992 1684 2392 2093 476 6579 429 322 2129 7839 1029 4390 371 1592 4327 5084 7609 5684 6401 5634 5288 5291 5639 5445 6437 8528 6761 4680 5078 5024 6170 6290 ]
C [ 6228 6425 6299 5748 5832 6329 6262 6363 6189 4657 4392 6063 6381 8990 5356 6257 6969 3051 6284 10978 1790 17594 21558 12700 15144 21939 3119 2649 8356 3838 542 2089 9261 7322 3970 5873 5094 5537 5540 5248 4509 4231 5464 5505 5663 5646 4791 7458 7556 5917 ]
G [ 5822 5947 5813 5830 5728 5413 5710 6057 5295 6882 8157 7224 6064 4849 4882 5062 5690 7134 11065 2497 14669 2123 306 1153 293 182 825 8494 11520 1960 20771 16769 3148 5440 7650 6252 5698 6319 6458 6986 7994 8916 5862 4427 4915 5262 7039 5923 4552 5579 ]
T [ 5589 5556 5616 5723 5888 5872 5640 5069 6535 5552 4880 5048 5651 4721 6141 4147 7092 3745 2595 7777 4085 1126 596 2504 7070 493 16862 3954 2031 12748 1252 2486 6200 5090 3707 5127 5743 5446 5650 5411 4794 4344 5173 4476 5597 7348 6028 4531 4658 5150 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.01 -0.06 -0.04 -0.01 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.01 0.01 0.00 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.00 0.03 0.10 -0.02 0.09 0.13 0.08 0.10 0.14 0.02 -0.00 0.04 0.05 -0.03 -0.03 0.04 0.03 -0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.09 -0.02 -0.03 -0.00 -0.04 -0.02 0.00 0.04 0.08 -0.01 0.14 0.09 -0.01 0.03 0.04 0.02 ]
T [ -0.00 -0.01 0.00 -0.01 0.02 -0.02 -0.02 0.01 -0.01 -0.05 -0.04 -0.04 0.03 -0.04 0.06 -0.01 -0.02 0.02 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 448

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages