Detailed information of deep learning profile BP000027.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000027.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BPJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.06 0.04 0.12 0.07 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5150 4658 4531 6028 7348 5597 4476 5173 4344 4794 5411 5650 5446 5743 5127 3707 5090 6200 2486 1252 12748 2031 3954 16862 493 7070 2504 596 1126 4085 7777 2595 3745 7092 4147 6141 4721 5651 5048 4880 5552 6535 5069 5640 5872 5888 5723 5616 5556 5589 ]
C [ 5579 4552 5923 7039 5262 4915 4427 5862 8916 7994 6986 6458 6319 5698 6252 7650 5440 3148 16769 20771 1960 11520 8494 825 182 293 1153 306 2123 14669 2497 11065 7134 5690 5062 4882 4849 6064 7224 8157 6882 5295 6057 5710 5413 5728 5830 5813 5947 5822 ]
G [ 5917 7556 7458 4791 5646 5663 5505 5464 4231 4509 5248 5540 5537 5094 5873 3970 7322 9261 2089 542 3838 8356 2649 3119 21939 15144 12700 21558 17594 1790 10978 6284 3051 6969 6257 5356 8990 6381 6063 4392 4657 6189 6363 6262 6329 5832 5748 6299 6425 6228 ]
T [ 6290 6170 5024 5078 4680 6761 8528 6437 5445 5639 5291 5288 5634 6401 5684 7609 5084 4327 1592 371 4390 1029 7839 2129 322 429 6579 476 2093 2392 1684 2992 9006 3185 7470 6557 4376 4840 4601 5507 5845 4917 5447 5324 5322 5488 5635 5208 5008 5297 ]

Hypothetical CWM

   
A [ -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.02 -0.02 -0.01 0.06 -0.04 0.03 -0.04 -0.04 -0.05 -0.01 0.01 -0.02 -0.02 0.02 -0.01 0.00 -0.01 -0.00 ]
C [ 0.02 0.04 0.03 -0.01 0.09 0.14 -0.01 0.08 0.04 0.00 -0.02 -0.04 -0.00 -0.03 -0.02 0.09 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 -0.00 0.03 0.04 -0.03 -0.03 0.05 0.04 -0.00 0.02 0.14 0.10 0.08 0.13 0.09 -0.02 0.10 0.03 -0.00 0.02 0.02 0.01 0.03 0.01 ]
T [ 0.00 0.01 -0.01 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.01 -0.04 -0.06 0.01 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 448

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages