Detailed information of deep learning profile BP000026.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in T47D using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000026.1
Cell line/tissue: T47D
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BNO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.11 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.12 0.04 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 -0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 4014 5880 7227 5320 4071 4824 4013 4501 5153 5367 5546 5662 4974 3144 4708 5838 2230 685 14452 1404 3552 17285 367 8683 1138 362 569 3264 8805 2009 3001 7654 3749 6540 4564 5336 4947 4363 5614 7091 4391 5456 5832 6233 5687 5538 5516 5559 5529 5241 ]
C [ 5585 6508 4603 4209 3687 5297 8433 7240 6680 6023 5636 4905 5483 6802 4439 2553 16001 20218 1184 11875 8155 678 177 162 823 103 860 15595 1080 11174 7348 5356 4304 3964 3754 6005 7211 8662 7064 4240 5928 4998 4901 4789 4874 5138 5426 5451 5422 5602 ]
G [ 6880 4102 5182 5017 4893 4971 3542 3954 4747 5035 4928 4377 5329 3385 7267 9098 1730 315 2975 7483 1899 2053 20762 12441 11072 20791 18331 700 10434 6251 2009 6063 5761 4621 9332 5782 5171 3015 3242 5890 5846 5885 5526 4829 4973 5978 5851 5590 5423 5559 ]
T [ 5025 5014 4492 6958 8853 6412 5516 5809 4924 5079 5394 6560 5718 8173 5090 4015 1543 286 2893 742 7898 1488 198 218 8471 248 1744 1945 1185 2070 9146 2431 7690 6379 3854 4381 4175 5464 5584 4283 5339 5165 5245 5653 5970 4850 4711 4904 5130 5102 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.03 0.04 -0.04 -0.03 -0.04 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.04 0.02 -0.01 0.07 0.12 -0.01 0.07 0.04 0.01 -0.01 -0.03 0.00 -0.02 -0.01 0.09 -0.01 0.05 0.03 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.00 0.03 0.04 -0.01 -0.02 0.05 0.04 -0.00 0.02 0.12 0.08 0.07 0.11 0.09 -0.02 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.02 ]
T [ -0.00 0.00 0.00 0.01 -0.01 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.06 0.02 -0.02 0.01 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 36

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages