Detailed information of deep learning profile BP000026.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in T47D using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000026.1
Cell line/tissue: T47D
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BNO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ -0.00 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.03 0.04 0.12 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.11 0.06 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5102 5130 4904 4711 4850 5970 5653 5245 5165 5339 4283 5584 5464 4175 4381 3854 6379 7690 2431 9146 2070 1185 1945 1744 248 8471 218 198 1488 7898 742 2893 286 1543 4015 5090 8173 5718 6560 5394 5079 4924 5809 5516 6412 8853 6958 4492 5014 5025 ]
C [ 5559 5423 5590 5851 5978 4973 4829 5526 5885 5846 5890 3242 3015 5171 5782 9332 4621 5761 6063 2009 6251 10434 700 18331 20791 11072 12441 20762 2053 1899 7483 2975 315 1730 9098 7267 3385 5329 4377 4928 5035 4747 3954 3542 4971 4893 5017 5182 4102 6880 ]
G [ 5602 5422 5451 5426 5138 4874 4789 4901 4998 5928 4240 7064 8662 7211 6005 3754 3964 4304 5356 7348 11174 1080 15595 860 103 823 162 177 678 8155 11875 1184 20218 16001 2553 4439 6802 5483 4905 5636 6023 6680 7240 8433 5297 3687 4209 4603 6508 5585 ]
T [ 5241 5529 5559 5516 5538 5687 6233 5832 5456 4391 7091 5614 4363 4947 5336 4564 6540 3749 7654 3001 2009 8805 3264 569 362 1138 8683 367 17285 3552 1404 14452 685 2230 5838 4708 3144 4974 5662 5546 5367 5153 4501 4013 4824 4071 5320 7227 5880 4014 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.01 -0.02 0.02 -0.06 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.02 -0.01 -0.01 0.01 0.00 0.00 -0.00 ]
C [ 0.02 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.02 0.09 0.11 0.07 0.08 0.12 0.02 -0.00 0.04 0.05 -0.02 -0.01 0.04 0.03 0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.03 0.05 -0.01 0.09 -0.01 -0.02 0.00 -0.03 -0.01 0.01 0.04 0.07 -0.01 0.12 0.07 -0.01 0.02 0.04 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.04 -0.03 -0.04 0.04 -0.03 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 36

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages