Detailed information of deep learning profile BP000024.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000024.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BLX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.19 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5198 5282 5163 4845 4984 5706 5577 5279 5244 5345 4691 5683 5334 4451 4812 4117 6568 7885 2793 9279 2636 1443 2108 1885 331 6929 295 213 1803 8005 952 3882 359 1650 4178 5278 7526 5604 6363 5576 5231 5111 5664 5522 6279 8371 6633 4911 5105 5053 ]
C [ 5507 5395 5511 5635 5672 5021 4934 5595 5733 5692 5473 3813 3661 5614 5557 8499 4690 5383 6220 2075 5658 10325 959 17658 20541 11944 13362 20708 2533 2086 7876 2823 526 1927 8677 6652 3613 5215 4463 4922 4965 4784 4139 3769 4804 4837 4918 4858 4212 6685 ]
G [ 5392 5219 5244 5344 5139 4959 4968 4834 4977 5514 4690 6487 7627 6562 5491 4114 4151 4282 5073 6794 10974 1620 14706 1227 141 745 203 114 598 7649 10736 1572 19610 15357 2669 4591 6810 5719 5090 5475 5908 6352 6963 7868 5288 3969 4429 4574 6250 5389 ]
T [ 5327 5528 5506 5600 5629 5738 5945 5716 5470 4873 6570 5441 4802 4797 5564 4694 6015 3874 7338 3276 2156 8036 3651 654 411 1806 7564 389 16490 3684 1860 13147 929 2490 5900 4903 3475 4886 5508 5451 5320 5177 4658 4265 5053 4247 5444 7081 5857 4297 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.08 -0.04 -0.02 0.06 -0.05 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.01 0.05 0.15 -0.01 0.15 0.19 0.12 0.15 0.20 0.03 -0.01 0.06 0.07 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 0.02 ]
G [ 0.03 0.01 0.01 0.01 0.04 0.06 0.09 -0.01 0.15 -0.03 -0.03 -0.00 -0.06 -0.02 0.00 0.06 0.12 -0.02 0.20 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 ]
T [ -0.00 -0.01 0.01 -0.03 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.06 -0.06 0.05 -0.04 0.09 -0.01 -0.02 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 196

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages