Detailed information of deep learning profile BP000024.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000024.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BLX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.19 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4297 5857 7081 5444 4247 5053 4265 4658 5177 5320 5451 5508 4886 3475 4903 5900 2490 929 13147 1860 3684 16490 389 7564 1806 411 654 3651 8036 2156 3276 7338 3874 6015 4694 5564 4797 4802 5441 6570 4873 5470 5716 5945 5738 5629 5600 5506 5528 5327 ]
C [ 5389 6250 4574 4429 3969 5288 7868 6963 6352 5908 5475 5090 5719 6810 4591 2669 15357 19610 1572 10736 7649 598 114 203 745 141 1227 14706 1620 10974 6794 5073 4282 4151 4114 5491 6562 7627 6487 4690 5514 4977 4834 4968 4959 5139 5344 5244 5219 5392 ]
G [ 6685 4212 4858 4918 4837 4804 3769 4139 4784 4965 4922 4463 5215 3613 6652 8677 1927 526 2823 7876 2086 2533 20708 13362 11944 20541 17658 959 10325 5658 2075 6220 5383 4690 8499 5557 5614 3661 3813 5473 5692 5733 5595 4934 5021 5672 5635 5511 5395 5507 ]
T [ 5053 5105 4911 6633 8371 6279 5522 5664 5111 5231 5576 6363 5604 7526 5278 4178 1650 359 3882 952 8005 1803 213 295 6929 331 1885 2108 1443 2636 9279 2793 7885 6568 4117 4812 4451 5334 5683 4691 5345 5244 5279 5577 5706 4984 4845 5163 5282 5198 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.02 -0.01 0.09 -0.04 0.05 -0.06 -0.06 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.03 0.01 -0.01 -0.00 ]
C [ 0.02 0.01 0.02 0.05 0.04 -0.01 0.12 0.20 -0.02 0.12 0.06 0.00 -0.02 -0.06 -0.00 -0.03 -0.03 0.15 -0.01 0.09 0.06 0.04 0.01 0.01 0.01 0.03 ]
G [ 0.02 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.07 0.06 -0.01 0.03 0.20 0.15 0.12 0.19 0.15 -0.01 0.15 0.05 -0.01 0.04 0.03 0.00 0.05 0.02 ]
T [ -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.05 0.06 -0.02 -0.04 -0.08 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 196

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages