Detailed information of deep learning profile BP000022.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000022.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BHW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.11 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4218 5617 7051 5284 4134 4897 4162 4519 5216 5286 5406 5426 4908 3340 4802 5749 2346 945 13077 1840 3515 16573 382 7720 1585 422 604 3484 8175 2124 3188 7227 3806 6058 4518 5531 4847 4576 5340 6392 4616 5305 5694 5814 5567 5538 5380 5378 5418 5282 ]
C [ 5344 6164 4554 4298 3810 5130 7828 6992 6225 5740 5511 5047 5520 6734 4476 2633 15240 19346 1532 10820 7902 638 137 182 713 118 1117 14736 1511 10794 6807 5065 4356 4025 3957 5458 6471 7634 6531 4536 5601 4906 4756 4931 4979 5044 5302 5216 5207 5353 ]
G [ 6617 4246 4891 4863 4815 4808 3743 3988 4750 5020 4855 4453 5113 3470 6726 8652 1842 430 2940 7541 1910 2229 20367 12899 11727 20204 17552 950 9979 5740 2057 6087 5414 4519 8726 5554 5481 3485 3666 5455 5682 5722 5498 4941 4926 5651 5589 5487 5285 5390 ]
T [ 4888 5040 4571 6622 8308 6232 5334 5568 4876 5021 5295 6141 5526 7523 5063 4033 1639 346 3518 866 7740 1627 181 266 7042 323 1794 1897 1402 2409 9015 2688 7491 6465 3866 4524 4268 5372 5530 4684 5168 5134 5119 5381 5595 4834 4796 4986 5157 5042 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.06 -0.05 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.04 0.03 -0.02 0.11 0.17 -0.02 0.11 0.05 -0.00 -0.03 -0.07 -0.01 -0.03 -0.03 0.14 -0.02 0.07 0.04 0.04 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.05 -0.03 -0.03 0.06 0.05 -0.01 0.02 0.17 0.12 0.10 0.17 0.13 -0.03 0.13 0.04 -0.01 0.02 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.06 0.06 -0.02 -0.04 -0.07 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages