Detailed information of deep learning profile BP000022.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000022.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000BHW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5042 5157 4986 4796 4834 5595 5381 5119 5134 5168 4684 5530 5372 4268 4524 3866 6465 7491 2688 9015 2409 1402 1897 1794 323 7042 266 181 1627 7740 866 3518 346 1639 4033 5063 7523 5526 6141 5295 5021 4876 5568 5334 6232 8308 6622 4571 5040 4888 ]
C [ 5390 5285 5487 5589 5651 4926 4941 5498 5722 5682 5455 3666 3485 5481 5554 8726 4519 5414 6087 2057 5740 9979 950 17552 20204 11727 12899 20367 2229 1910 7541 2940 430 1842 8652 6726 3470 5113 4453 4855 5020 4750 3988 3743 4808 4815 4863 4891 4246 6617 ]
G [ 5353 5207 5216 5302 5044 4979 4931 4756 4906 5601 4536 6531 7634 6471 5458 3957 4025 4356 5065 6807 10794 1511 14736 1117 118 713 182 137 638 7902 10820 1532 19346 15240 2633 4476 6734 5520 5047 5511 5740 6225 6992 7828 5130 3810 4298 4554 6164 5344 ]
T [ 5282 5418 5378 5380 5538 5567 5814 5694 5305 4616 6392 5340 4576 4847 5531 4518 6058 3806 7227 3188 2124 8175 3484 604 422 1585 7720 382 16573 3515 1840 13077 945 2346 5749 4802 3340 4908 5426 5406 5286 5216 4519 4162 4897 4134 5284 7051 5617 4218 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.07 -0.04 -0.02 0.06 -0.06 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.02 -0.01 0.04 0.13 -0.03 0.13 0.17 0.10 0.12 0.17 0.02 -0.01 0.05 0.06 -0.03 -0.03 0.05 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.04 0.04 0.07 -0.02 0.14 -0.03 -0.03 -0.01 -0.07 -0.03 -0.00 0.05 0.11 -0.02 0.17 0.11 -0.02 0.03 0.04 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.05 -0.06 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages