Detailed information of deep learning profile BP000020.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in B cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000020.1
Cell line/tissue: B cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AUV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.09 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4359 4225 4260 4802 4750 4456 4574 4558 4156 4788 4589 3753 3987 3554 5482 6390 2631 7665 2383 1342 1857 1603 218 5735 244 206 1602 6574 845 3360 369 1430 3378 4545 6295 4806 5341 4731 4342 4266 4708 4506 5354 7176 5610 3956 4379 4356 5137 5267 ]
C [ 5324 5417 5448 4938 4851 5364 5324 5350 5269 3949 3763 5271 5429 7846 4564 5287 5781 2452 5172 9817 1236 15660 18760 11195 12917 18701 2146 2155 7101 3469 520 1829 8223 6098 3502 5025 4318 4631 4819 4588 3994 3749 4760 4746 4876 4788 4063 6298 6404 5059 ]
G [ 5008 4978 4842 4887 4822 4706 4781 5348 4512 5883 6908 5979 5141 3969 4165 4262 4726 6270 9754 1669 13126 1377 133 928 176 120 778 7520 9734 1720 17554 13974 2624 4649 6625 5191 4950 5234 5530 5942 6750 7434 4864 3796 4226 4449 6021 5017 3911 4830 ]
T [ 4698 4769 4839 4762 4966 4863 4710 4133 5452 4769 4129 4386 4832 4020 5178 3450 6251 3002 2080 6561 3170 749 278 1531 6052 362 14863 3140 1709 10840 946 2156 5164 4097 2967 4367 4780 4793 4698 4593 3937 3700 4411 3671 4677 6196 4926 3718 3937 4233 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.00 -0.05 0.02 -0.09 -0.05 -0.04 0.06 -0.06 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.01 0.04 0.13 -0.01 0.14 0.18 0.11 0.14 0.19 0.03 -0.01 0.05 0.07 -0.02 -0.03 0.06 0.04 0.00 0.02 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.02 -0.08 -0.03 -0.00 0.06 0.12 -0.01 0.19 0.12 -0.01 0.05 0.05 0.02 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.07 -0.07 0.05 -0.06 0.10 -0.02 -0.03 0.03 -0.04 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 578

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages