Detailed information of deep learning profile BP000020.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in B cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000020.1
Cell line/tissue: B cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AUV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.09 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4233 3937 3718 4926 6196 4677 3671 4411 3700 3937 4593 4698 4793 4780 4367 2967 4097 5164 2156 946 10840 1709 3140 14863 362 6052 1531 278 749 3170 6561 2080 3002 6251 3450 5178 4020 4832 4386 4129 4769 5452 4133 4710 4863 4966 4762 4839 4769 4698 ]
C [ 4830 3911 5017 6021 4449 4226 3796 4864 7434 6750 5942 5530 5234 4950 5191 6625 4649 2624 13974 17554 1720 9734 7520 778 120 176 928 133 1377 13126 1669 9754 6270 4726 4262 4165 3969 5141 5979 6908 5883 4512 5348 4781 4706 4822 4887 4842 4978 5008 ]
G [ 5059 6404 6298 4063 4788 4876 4746 4760 3749 3994 4588 4819 4631 4318 5025 3502 6098 8223 1829 520 3469 7101 2155 2146 18701 12917 11195 18760 15660 1236 9817 5172 2452 5781 5287 4564 7846 5429 5271 3763 3949 5269 5350 5324 5364 4851 4938 5448 5417 5324 ]
T [ 5267 5137 4356 4379 3956 5610 7176 5354 4506 4708 4266 4342 4731 5341 4806 6295 4545 3378 1430 369 3360 845 6574 1602 206 244 5735 218 1603 1857 1342 2383 7665 2631 6390 5482 3554 3987 3753 4589 4788 4156 4558 4574 4456 4750 4802 4260 4225 4359 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.03 -0.03 -0.02 0.10 -0.06 0.05 -0.07 -0.07 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.02 0.05 0.05 -0.01 0.12 0.19 -0.01 0.12 0.06 -0.00 -0.03 -0.08 -0.02 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.02 0.00 0.04 0.06 -0.03 -0.02 0.07 0.05 -0.01 0.03 0.19 0.14 0.11 0.18 0.14 -0.01 0.13 0.04 -0.01 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.09 -0.03 -0.06 0.06 -0.04 -0.05 -0.09 0.02 -0.05 0.00 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 578

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages