Detailed information of deep learning profile BP000017.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in CD14-positive monocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000017.1
Cell line/tissue: CD14-positive monocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ATN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.12 0.19 0.06 0.09 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4021 3899 4039 4499 4460 4160 4233 4215 3844 4436 4318 3553 3681 3218 5122 6200 2278 7391 2118 1101 1663 1441 374 5259 218 185 1289 6317 666 2849 273 1271 3285 4151 6227 4548 5167 4493 4168 4110 4575 4271 5180 6930 5350 3531 4043 3935 4834 4916 ]
C [ 5001 5033 5076 4639 4521 4960 5054 4982 4930 3557 3386 4821 4915 7407 4269 4891 5541 2319 5020 9171 1085 14625 17111 10386 11639 17473 2083 1892 6670 3208 403 1615 7779 5997 3027 4652 4037 4283 4439 4246 3633 3297 4393 4206 4476 4522 3698 6044 6165 4698 ]
G [ 4669 4764 4471 4424 4376 4367 4421 5061 4064 5689 6488 5660 5008 3704 3737 3878 4435 5667 9041 1542 12364 1317 222 906 189 137 682 6973 9342 1401 16680 13351 2329 4083 6108 4878 4484 4809 5100 5604 6292 7198 4504 3451 3871 4121 5659 4756 3578 4480 ]
T [ 4416 4411 4521 4545 4750 4620 4399 3849 5269 4425 3915 4073 4503 3778 4979 3138 5853 2730 1928 6293 2995 724 400 1556 6061 312 14053 2925 1429 10649 751 1870 4714 3876 2745 4029 4419 4522 4400 4147 3607 3341 4030 3520 4410 5933 4707 3372 3530 4013 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.03 0.01 -0.05 0.03 -0.09 -0.04 -0.04 0.07 -0.07 -0.03 -0.09 -0.04 -0.02 -0.00 0.03 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.15 -0.03 0.15 0.20 0.12 0.15 0.20 0.02 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 -0.01 0.02 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.03 0.15 -0.04 -0.05 -0.01 -0.07 -0.02 -0.01 0.06 0.14 -0.02 0.20 0.14 -0.01 0.04 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.06 -0.05 -0.07 0.06 -0.07 0.11 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 338

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 114

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages