Detailed information of deep learning profile BP000016.1

  1. Home
  2. Deep Learning Profile > BP000016.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in DND-41 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000016.1
Cell line/tissue: DND-41
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AQU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.06 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5008 4590 4326 5778 7129 5634 4234 5162 4252 4687 5454 5437 5385 5620 5117 3681 5141 5969 2664 1412 12883 2118 3914 16502 469 6805 2234 605 1058 4058 7970 2510 3805 7187 4178 6054 4778 5616 5106 5063 5603 6522 4941 5622 5808 5923 5819 5728 5578 5619 ]
C [ 5376 4533 5874 6953 5247 4841 4371 5573 8893 7850 6793 6454 6212 5630 6101 7586 5309 3101 15827 19987 2050 11056 8354 829 161 267 981 323 1938 14457 2190 10953 7195 5317 4923 4810 4615 5968 6839 7836 6560 5152 6060 5525 5374 5514 5512 5637 5691 5563 ]
G [ 5970 7277 7498 4662 5461 5623 5436 5387 4152 4404 5167 5435 5391 4943 5669 3944 6770 9212 2365 674 3012 8287 2447 3089 21572 15059 12475 21015 17597 1607 10601 5990 2817 6792 5871 5192 8811 5995 6041 4311 4595 5987 6193 6089 6101 5457 5551 6101 6286 6058 ]
T [ 6201 6155 4857 5162 4718 6457 8514 6433 5258 5614 5141 5229 5567 6362 5668 7344 5335 4273 1699 482 4610 1094 7840 2135 353 424 6865 612 1962 2433 1794 3102 8738 3259 7583 6499 4351 4976 4569 5345 5797 4894 5361 5319 5272 5661 5673 5089 5000 5315 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.06 -0.05 -0.06 -0.02 0.02 -0.02 -0.01 0.03 -0.01 0.02 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.04 -0.01 0.11 0.18 -0.02 0.11 0.05 -0.01 -0.04 -0.07 -0.01 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.06 -0.02 -0.03 0.06 0.05 -0.01 0.03 0.18 0.14 0.11 0.17 0.14 -0.02 0.12 0.03 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.08 -0.02 -0.06 0.06 -0.03 -0.03 -0.07 0.03 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.03 0.03 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages