Detailed information of deep learning profile BP000016.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in DND-41 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000016.1
Cell line/tissue: DND-41
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AQU
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.06 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5315 5000 5089 5673 5661 5272 5319 5361 4894 5797 5345 4569 4976 4351 6499 7583 3259 8738 3102 1794 2433 1962 612 6865 424 353 2135 7840 1094 4610 482 1699 4273 5335 7344 5668 6362 5567 5229 5141 5614 5258 6433 8514 6457 4718 5162 4857 6155 6201 ]
C [ 6058 6286 6101 5551 5457 6101 6089 6193 5987 4595 4311 6041 5995 8811 5192 5871 6792 2817 5990 10601 1607 17597 21015 12475 15059 21572 3089 2447 8287 3012 674 2365 9212 6770 3944 5669 4943 5391 5435 5167 4404 4152 5387 5436 5623 5461 4662 7498 7277 5970 ]
G [ 5563 5691 5637 5512 5514 5374 5525 6060 5152 6560 7836 6839 5968 4615 4810 4923 5317 7195 10953 2190 14457 1938 323 981 267 161 829 8354 11056 2050 19987 15827 3101 5309 7586 6101 5630 6212 6454 6793 7850 8893 5573 4371 4841 5247 6953 5874 4533 5376 ]
T [ 5619 5578 5728 5819 5923 5808 5622 4941 6522 5603 5063 5106 5616 4778 6054 4178 7187 3805 2510 7970 4058 1058 605 2234 6805 469 16502 3914 2118 12883 1412 2664 5969 5141 3681 5117 5620 5385 5437 5454 4687 4252 5162 4234 5634 7129 5778 4326 4590 5008 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.03 -0.03 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.03 -0.07 -0.03 -0.03 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.03 0.12 -0.02 0.14 0.17 0.11 0.14 0.18 0.03 -0.01 0.05 0.06 -0.03 -0.02 0.06 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.01 -0.07 -0.04 -0.01 0.05 0.11 -0.02 0.18 0.11 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.02 -0.01 0.03 -0.01 -0.02 0.02 -0.02 -0.06 -0.05 -0.06 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages