Detailed information of deep learning profile BP000015.1

  1. Home
  2. Deep Learning Profile > BP000015.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of dermis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000015.1
Cell line/tissue: fibroblast of dermis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000APM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.09 0.14 0.05 0.07 0.17 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4898 4583 4741 5259 5200 4993 4983 5050 4512 5124 4830 4304 4389 4113 5811 6540 3190 7525 3083 1867 2433 2024 894 5437 498 284 1728 7261 839 4018 64 1332 3985 4820 7023 5140 6234 5437 4734 4692 5106 4888 5961 8287 6220 4302 4793 4496 5824 5733 ]
C [ 5326 5435 5531 5010 4967 5378 5529 5345 5445 4147 3937 5263 5491 7628 4828 5516 6009 3071 5497 9025 1705 14913 18299 11549 13290 19607 2571 1922 7581 2306 68 1468 8393 6397 3137 4891 4249 4600 4802 4428 3803 3435 4705 4616 4886 4792 3791 6646 6669 5023 ]
G [ 5058 5225 5010 4913 4889 4878 4916 5381 4657 5942 6906 6212 5372 4215 4207 4317 4746 6180 9051 2517 12084 2062 504 993 265 134 608 7723 10527 1248 20137 15559 2519 4699 7096 5991 4844 5459 5587 6341 7168 8278 5093 3681 4266 4449 6444 5335 3836 4960 ]
T [ 5156 5195 5156 5256 5382 5189 5010 4662 5824 5225 4765 4659 5186 4482 5592 4065 6493 3662 2807 7029 4216 1439 741 2459 6385 413 15531 3532 1491 12866 169 2079 5541 4522 3182 4416 5111 4942 5315 4977 4361 3837 4679 3854 5066 6895 5410 3961 4109 4722 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.03 0.01 -0.06 -0.04 -0.02 0.06 -0.05 -0.01 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.00 0.04 0.11 -0.01 0.11 0.15 0.10 0.12 0.17 0.03 -0.01 0.05 0.07 -0.03 -0.03 0.05 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.10 -0.02 -0.03 -0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.02 0.18 0.12 -0.01 0.03 0.06 0.03 0.01 0.01 0.02 ]
T [ 0.00 0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1716

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages