Detailed information of deep learning profile BP000014.1

  1. Home
  2. Deep Learning Profile > BP000014.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in osteoblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000014.1
Cell line/tissue: osteoblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000APF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 0.00 0.13 0.20 0.07 0.10 0.23 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.08 0.00 0.23 0.13 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.10 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4689 4454 4555 4942 4939 4556 4728 4760 4406 4757 4657 4165 4183 3912 5604 6389 2983 7409 2739 1740 2240 1860 765 5138 468 306 1583 6999 803 3642 244 1241 3774 4520 6688 4910 5916 5190 4588 4438 4925 4645 5747 7815 5798 4046 4635 4263 5500 5346 ]
C [ 4997 5176 5197 4786 4800 5230 5213 5115 5081 3968 3730 5071 5223 7399 4510 5131 5780 2685 5005 9121 1512 14486 17533 11154 12584 18593 2531 1863 7004 2723 302 1607 7978 6103 3042 4732 4032 4467 4633 4295 3569 3249 4483 4408 4635 4441 3711 6463 6279 4849 ]
G [ 4892 4924 4798 4667 4703 4604 4675 5133 4434 5777 6555 5820 5070 3964 4010 4079 4555 5808 9069 2219 11687 1863 479 958 329 149 636 7309 9994 1407 18223 14606 2461 4426 6701 5574 4602 5091 5256 5986 6777 7904 4725 3509 4051 4195 6050 4916 3639 4701 ]
T [ 4867 4891 4895 5050 5003 5055 4829 4437 5524 4943 4503 4389 4969 4170 5321 3846 6127 3543 2632 6365 4006 1236 668 2195 6064 397 14695 3274 1644 11673 676 1991 5232 4396 3014 4229 4895 4697 4968 4726 4174 3647 4490 3713 4961 6763 5049 3803 4027 4549 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.03 0.00 -0.06 0.02 -0.09 -0.06 -0.04 0.08 -0.08 -0.02 -0.10 -0.06 -0.01 -0.01 0.03 0.01 0.02 0.01 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.01 0.05 0.15 -0.02 0.16 0.21 0.13 0.17 0.23 0.04 -0.02 0.07 0.08 -0.04 -0.03 0.07 0.05 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.08 -0.02 0.15 -0.03 -0.05 -0.00 -0.08 -0.04 -0.02 0.06 0.15 -0.03 0.24 0.16 -0.02 0.05 0.07 0.03 0.01 0.02 0.03 ]
T [ 0.01 -0.00 0.02 -0.02 0.04 -0.02 -0.02 0.03 -0.01 -0.07 -0.07 -0.07 0.05 -0.07 0.12 -0.02 -0.04 0.06 -0.04 -0.01 0.03 -0.02 -0.03 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 518

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages