Detailed information of deep learning profile BP000014.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in osteoblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000014.1
Cell line/tissue: osteoblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000APF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.13 0.23 0.00 0.08 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.23 0.10 0.07 0.20 0.13 0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4549 4027 3803 5049 6763 4961 3713 4490 3647 4174 4726 4968 4697 4895 4229 3014 4396 5232 1991 676 11673 1644 3274 14695 397 6064 2195 668 1236 4006 6365 2632 3543 6127 3846 5321 4170 4969 4389 4503 4943 5524 4437 4829 5055 5003 5050 4895 4891 4867 ]
C [ 4701 3639 4916 6050 4195 4051 3509 4725 7904 6777 5986 5256 5091 4602 5574 6701 4426 2461 14606 18223 1407 9994 7309 636 149 329 958 479 1863 11687 2219 9069 5808 4555 4079 4010 3964 5070 5820 6555 5777 4434 5133 4675 4604 4703 4667 4798 4924 4892 ]
G [ 4849 6279 6463 3711 4441 4635 4408 4483 3249 3569 4295 4633 4467 4032 4732 3042 6103 7978 1607 302 2723 7004 1863 2531 18593 12584 11154 17533 14486 1512 9121 5005 2685 5780 5131 4510 7399 5223 5071 3730 3968 5081 5115 5213 5230 4800 4786 5197 5176 4997 ]
T [ 5346 5500 4263 4635 4046 5798 7815 5747 4645 4925 4438 4588 5190 5916 4910 6688 4520 3774 1241 244 3642 803 6999 1583 306 468 5138 765 1860 2240 1740 2739 7409 2983 6389 5604 3912 4183 4165 4657 4757 4406 4760 4728 4556 4939 4942 4555 4454 4689 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.03 -0.02 0.03 -0.01 -0.04 0.06 -0.04 -0.02 0.12 -0.07 0.05 -0.07 -0.07 -0.07 -0.01 0.03 -0.02 -0.02 0.04 -0.02 0.02 -0.00 0.01 ]
C [ 0.03 0.02 0.01 0.03 0.07 0.05 -0.02 0.16 0.24 -0.03 0.15 0.06 -0.02 -0.04 -0.08 -0.00 -0.05 -0.03 0.15 -0.02 0.08 0.05 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.05 0.07 -0.03 -0.04 0.08 0.07 -0.02 0.04 0.23 0.17 0.13 0.21 0.16 -0.02 0.15 0.05 -0.01 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.00 0.01 0.02 0.01 0.03 -0.01 -0.01 -0.06 -0.10 -0.02 -0.08 0.08 -0.04 -0.06 -0.09 0.02 -0.06 0.00 -0.03 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 518

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
BP000091.1 CTCF ENCSR000DUX fibroblast of pulmonary artery Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages