Detailed information of deep learning profile BP000013.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000013.1
Cell line/tissue: astrocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AOO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4398 4139 4238 5014 4798 4522 4454 4628 4003 4653 4718 3700 3974 3407 5427 6519 2351 7793 2109 1361 1801 1574 232 5896 205 164 1156 6835 677 2961 200 1244 3526 4382 6736 4872 5559 4767 4402 4289 4885 4614 5668 7930 5837 3822 4313 4168 5282 5435 ]
C [ 4657 4838 4953 4234 4150 4775 5028 4731 4713 3288 3024 4744 4763 7469 3941 4689 5280 1940 4974 8652 761 15340 17645 10292 11311 17783 1735 1390 6685 2421 230 1215 7621 5903 2774 4569 3664 4008 4198 3987 3309 2862 4127 3914 4315 4208 3356 6164 6097 4432 ]
G [ 4483 4623 4350 4161 4219 4147 4214 4876 3947 5578 6471 5731 4812 3399 3495 3726 4288 5794 9123 1276 12680 765 93 633 135 73 419 7154 9620 1021 17336 13971 2129 3861 5979 4713 4281 4800 5110 5507 6246 7313 4348 3080 3525 3767 5667 4486 3205 4243 ]
T [ 4744 4682 4741 4873 5115 4838 4586 4047 5619 4763 4069 4107 4733 4007 5419 3348 6363 2755 2076 6993 3040 603 312 1461 6631 262 14972 2903 1300 11879 516 1852 5006 4136 2793 4128 4778 4707 4572 4499 3842 3493 4139 3358 4605 6485 4946 3464 3698 4172 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.03 -0.03 0.07 -0.05 -0.02 -0.08 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.05 0.14 -0.02 0.14 0.18 0.11 0.14 0.19 0.04 -0.01 0.06 0.08 -0.03 -0.02 0.07 0.05 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.13 -0.03 -0.04 0.01 -0.06 -0.02 0.00 0.06 0.13 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.06 -0.06 -0.06 0.05 -0.05 0.10 -0.01 -0.02 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 977

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_3

Num. of seqlets: 112

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages