Detailed information of deep learning profile BP000013.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000013.1
Cell line/tissue: astrocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AOO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4172 3698 3464 4946 6485 4605 3358 4139 3493 3842 4499 4572 4707 4778 4128 2793 4136 5006 1852 516 11879 1300 2903 14972 262 6631 1461 312 603 3040 6993 2076 2755 6363 3348 5419 4007 4733 4107 4069 4763 5619 4047 4586 4838 5115 4873 4741 4682 4744 ]
C [ 4243 3205 4486 5667 3767 3525 3080 4348 7313 6246 5507 5110 4800 4281 4713 5979 3861 2129 13971 17336 1021 9620 7154 419 73 135 633 93 765 12680 1276 9123 5794 4288 3726 3495 3399 4812 5731 6471 5578 3947 4876 4214 4147 4219 4161 4350 4623 4483 ]
G [ 4432 6097 6164 3356 4208 4315 3914 4127 2862 3309 3987 4198 4008 3664 4569 2774 5903 7621 1215 230 2421 6685 1390 1735 17783 11311 10292 17645 15340 761 8652 4974 1940 5280 4689 3941 7469 4763 4744 3024 3288 4713 4731 5028 4775 4150 4234 4953 4838 4657 ]
T [ 5435 5282 4168 4313 3822 5837 7930 5668 4614 4885 4289 4402 4767 5559 4872 6736 4382 3526 1244 200 2961 677 6835 1156 164 205 5896 232 1574 1801 1361 2109 7793 2351 6519 5427 3407 3974 3700 4718 4653 4003 4628 4454 4522 4798 5014 4238 4139 4398 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.02 -0.01 0.10 -0.05 0.05 -0.06 -0.06 -0.06 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.13 0.20 -0.02 0.13 0.06 0.00 -0.02 -0.06 0.01 -0.04 -0.03 0.13 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.05 0.07 -0.02 -0.03 0.08 0.06 -0.01 0.04 0.19 0.14 0.11 0.18 0.14 -0.02 0.14 0.05 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.08 -0.02 -0.05 0.07 -0.03 -0.03 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 977

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_3

Num. of seqlets: 112

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages