Detailed information of deep learning profile BP000010.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000010.1
Cell line/tissue: fibroblast of lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ANO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.07 0.18 0.11 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4451 3956 3681 5233 6690 4786 3739 4452 3706 4077 4717 4994 4813 4819 4319 2920 4373 5266 2001 740 11909 1477 3150 15194 320 6521 1890 478 951 3637 6870 2340 3216 6386 3690 5401 4239 4899 4479 4293 4884 5715 4319 4833 5063 5220 4986 4984 4924 4880 ]
C [ 4667 3646 4972 6030 4241 4121 3563 4817 7737 6667 6005 5374 5128 4645 5383 6712 4280 2335 14770 18259 1353 10369 7393 668 111 257 948 320 1783 12534 2076 9288 5950 4553 4132 3930 3909 5211 5891 6672 5893 4378 5222 4761 4635 4671 4678 4779 5000 4979 ]
G [ 4921 6480 6501 3741 4611 4715 4325 4480 3280 3692 4411 4605 4459 4219 4787 3078 6282 8189 1541 302 2970 6993 1822 2271 18925 12443 11223 18267 15084 1382 9067 5357 2564 5875 5115 4514 7602 5313 5136 3695 3914 5179 5207 5295 5166 4740 4830 5354 5174 5065 ]
T [ 5510 5467 4395 4545 4007 5927 7922 5800 4826 5113 4416 4576 5149 5866 5060 6839 4614 3759 1237 248 3317 710 7184 1416 193 328 5488 484 1731 1996 1536 2564 7819 2735 6612 5704 3799 4126 4043 4889 4858 4277 4801 4660 4685 4918 5055 4432 4451 4625 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.04 -0.02 0.10 -0.07 0.05 -0.07 -0.06 -0.06 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.14 0.21 -0.03 0.13 0.06 -0.02 -0.03 -0.07 -0.00 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.03 -0.03 0.08 0.06 -0.03 0.03 0.21 0.14 0.12 0.19 0.14 -0.02 0.13 0.04 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.04 -0.05 -0.08 0.02 -0.05 -0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.03 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 558

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages