Detailed information of deep learning profile BP000010.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000010.1
Cell line/tissue: fibroblast of lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ANO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.11 0.18 0.07 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4625 4451 4432 5055 4918 4685 4660 4801 4277 4858 4889 4043 4126 3799 5704 6612 2735 7819 2564 1536 1996 1731 484 5488 328 193 1416 7184 710 3317 248 1237 3759 4614 6839 5060 5866 5149 4576 4416 5113 4826 5800 7922 5927 4007 4545 4395 5467 5510 ]
C [ 5065 5174 5354 4830 4740 5166 5295 5207 5179 3914 3695 5136 5313 7602 4514 5115 5875 2564 5357 9067 1382 15084 18267 11223 12443 18925 2271 1822 6993 2970 302 1541 8189 6282 3078 4787 4219 4459 4605 4411 3692 3280 4480 4325 4715 4611 3741 6501 6480 4921 ]
G [ 4979 5000 4779 4678 4671 4635 4761 5222 4378 5893 6672 5891 5211 3909 3930 4132 4553 5950 9288 2076 12534 1783 320 948 257 111 668 7393 10369 1353 18259 14770 2335 4280 6712 5383 4645 5128 5374 6005 6667 7737 4817 3563 4121 4241 6030 4972 3646 4667 ]
T [ 4880 4924 4984 4986 5220 5063 4833 4319 5715 4884 4293 4479 4899 4239 5401 3690 6386 3216 2340 6870 3637 951 478 1890 6521 320 15194 3150 1477 11909 740 2001 5266 4373 2920 4319 4819 4813 4994 4717 4077 3706 4452 3739 4786 6690 5233 3681 3956 4451 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.03 -0.04 0.03 -0.02 -0.06 -0.03 -0.00 -0.05 0.02 -0.08 -0.05 -0.04 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.04 0.13 -0.02 0.14 0.19 0.12 0.14 0.21 0.03 -0.03 0.06 0.08 -0.03 -0.03 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.00 -0.07 -0.03 -0.02 0.06 0.13 -0.03 0.21 0.14 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.06 -0.06 -0.07 0.05 -0.07 0.10 -0.02 -0.04 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 558

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages