Detailed information of deep learning profile BP000009.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in skeletal muscle myoblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000009.1
Cell line/tissue: skeletal muscle myoblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ANE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.20 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5211 4523 4375 5947 7845 5741 4300 5119 4192 4739 5529 5760 5343 5557 4862 3451 5090 6238 2306 1038 13451 1852 3759 16872 458 6880 2640 835 1624 4653 7592 3005 4127 6990 4405 6147 4912 5858 5015 5272 5635 6230 5140 5575 5855 5868 5800 5730 5659 5622 ]
C [ 5425 4081 5695 7071 4882 4639 4033 5506 9271 7800 6862 5976 5933 5218 6388 7826 5139 2815 16808 20673 1612 11532 8317 607 152 344 1123 520 2464 13213 2745 10081 6636 5273 4690 4567 4635 5693 6635 7337 6430 5164 5751 5316 5364 5427 5399 5453 5644 5704 ]
G [ 5458 7360 7551 4244 5004 5347 4878 5212 3641 4110 4853 5377 5114 4757 5493 3531 6849 9059 1825 395 3142 8077 2107 3055 21524 14571 12997 20164 16152 1872 9982 5958 3206 6666 6056 5277 8455 6081 5964 4334 4730 5873 5926 6035 5909 5569 5548 6017 5982 5773 ]
T [ 6362 6492 4835 5194 4725 6729 9245 6619 5352 5807 5212 5343 6066 6924 5713 7648 5378 4344 1517 350 4251 995 8273 1922 322 661 5696 937 2216 2718 2137 3412 8487 3527 7305 6465 4454 4824 4842 5513 5661 5189 5639 5530 5328 5592 5709 5256 5171 5357 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.04 -0.02 0.10 -0.06 0.04 -0.07 -0.06 -0.06 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.14 0.21 -0.02 0.13 0.06 -0.01 -0.03 -0.07 0.00 -0.04 -0.02 0.11 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.04 0.06 -0.03 -0.04 0.08 0.06 -0.02 0.03 0.20 0.14 0.11 0.18 0.13 -0.01 0.12 0.05 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.03 -0.00 -0.02 -0.05 -0.09 -0.03 -0.06 0.07 -0.04 -0.05 -0.07 0.01 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages