Detailed information of deep learning profile BP000009.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in skeletal muscle myoblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000009.1
Cell line/tissue: skeletal muscle myoblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ANE
Model: BPNet
Download trained model
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.20 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5357 5171 5256 5709 5592 5328 5530 5639 5189 5661 5513 4842 4824 4454 6465 7305 3527 8487 3412 2137 2718 2216 937 5696 661 322 1922 8273 995 4251 350 1517 4344 5378 7648 5713 6924 6066 5343 5212 5807 5352 6619 9245 6729 4725 5194 4835 6492 6362 ]
C [ 5773 5982 6017 5548 5569 5909 6035 5926 5873 4730 4334 5964 6081 8455 5277 6056 6666 3206 5958 9982 1872 16152 20164 12997 14571 21524 3055 2107 8077 3142 395 1825 9059 6849 3531 5493 4757 5114 5377 4853 4110 3641 5212 4878 5347 5004 4244 7551 7360 5458 ]
G [ 5704 5644 5453 5399 5427 5364 5316 5751 5164 6430 7337 6635 5693 4635 4567 4690 5273 6636 10081 2745 13213 2464 520 1123 344 152 607 8317 11532 1612 20673 16808 2815 5139 7826 6388 5218 5933 5976 6862 7800 9271 5506 4033 4639 4882 7071 5695 4081 5425 ]
T [ 5622 5659 5730 5800 5868 5855 5575 5140 6230 5635 5272 5015 5858 4912 6147 4405 6990 4127 3005 7592 4653 1624 835 2640 6880 458 16872 3759 1852 13451 1038 2306 6238 5090 3451 4862 5557 5343 5760 5529 4739 4192 5119 4300 5741 7845 5947 4375 4523 5211 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.01 -0.07 -0.05 -0.04 0.07 -0.06 -0.03 -0.09 -0.05 -0.02 -0.00 0.03 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.05 0.12 -0.01 0.13 0.18 0.11 0.14 0.20 0.03 -0.02 0.06 0.08 -0.04 -0.03 0.06 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.04 0.00 -0.07 -0.03 -0.01 0.06 0.13 -0.02 0.21 0.14 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.06 -0.06 -0.07 0.04 -0.06 0.10 -0.02 -0.04 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages