Detailed information of deep learning profile BP000008.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000008.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.01 0.04 0.00 0.07 0.12 0.04 0.07 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.05 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4640 4368 4459 4939 4794 4516 4623 4665 4405 4855 4616 4107 4161 3935 5551 6075 3193 6930 3195 1912 2422 1975 736 5014 556 341 1772 6998 948 4202 442 1311 3629 4573 6345 4783 5700 4985 4599 4576 4836 4494 5448 7459 5751 3911 4423 4117 5464 5228 ]
C [ 5010 5172 5053 4807 4787 5005 5029 5113 4883 4204 3957 5079 5020 6845 4594 5082 5547 2981 5131 8559 2040 13266 17188 10890 12879 18300 2828 2012 6844 2711 526 1713 7795 5720 3161 4802 4042 4552 4577 4250 3581 3232 4444 4445 4638 4459 3858 6672 6347 4979 ]
G [ 4891 4775 4853 4736 4741 4620 4792 4967 4557 5386 6298 5589 5202 4207 4082 4299 4517 5697 8351 2637 10530 2538 645 855 249 167 508 6876 9595 1496 16957 14137 2439 4533 6666 5331 4750 5201 5212 5867 6821 7895 4769 3576 4029 4412 5938 4841 3496 4557 ]
T [ 4689 4915 4865 4748 4908 5089 4786 4485 5385 4785 4359 4455 4847 4243 5003 3774 5973 3622 2553 6122 4238 1451 661 2471 5546 422 14122 3344 1843 10821 1305 2069 5367 4404 3058 4314 4738 4492 4842 4537 3992 3609 4569 3750 4812 6448 5011 3600 3923 4466 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.04 0.01 -0.04 -0.03 -0.02 0.04 -0.05 -0.01 -0.07 -0.04 -0.02 -0.01 0.01 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.03 0.01 0.02 0.03 -0.01 0.03 0.09 -0.00 0.09 0.13 0.08 0.10 0.14 0.03 -0.02 0.04 0.05 -0.04 -0.03 0.04 0.03 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.02 0.03 0.05 -0.01 0.08 -0.01 -0.04 0.00 -0.05 -0.03 -0.03 0.03 0.08 -0.02 0.14 0.09 -0.01 0.03 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.04 -0.04 0.02 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.01 -0.02 -0.02 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 111

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 110

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages