Detailed information of deep learning profile BP000008.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000008.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.05 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.07 0.04 0.12 0.07 0.00 0.04 0.01 0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 4466 3923 3600 5011 6448 4812 3750 4569 3609 3992 4537 4842 4492 4738 4314 3058 4404 5367 2069 1305 10821 1843 3344 14122 422 5546 2471 661 1451 4238 6122 2553 3622 5973 3774 5003 4243 4847 4455 4359 4785 5385 4485 4786 5089 4908 4748 4865 4915 4689 ]
C [ 4557 3496 4841 5938 4412 4029 3576 4769 7895 6821 5867 5212 5201 4750 5331 6666 4533 2439 14137 16957 1496 9595 6876 508 167 249 855 645 2538 10530 2637 8351 5697 4517 4299 4082 4207 5202 5589 6298 5386 4557 4967 4792 4620 4741 4736 4853 4775 4891 ]
G [ 4979 6347 6672 3858 4459 4638 4445 4444 3232 3581 4250 4577 4552 4042 4802 3161 5720 7795 1713 526 2711 6844 2012 2828 18300 12879 10890 17188 13266 2040 8559 5131 2981 5547 5082 4594 6845 5020 5079 3957 4204 4883 5113 5029 5005 4787 4807 5053 5172 5010 ]
T [ 5228 5464 4117 4423 3911 5751 7459 5448 4494 4836 4576 4599 4985 5700 4783 6345 4573 3629 1311 442 4202 948 6998 1772 341 556 5014 736 1975 2422 1912 3195 6930 3193 6075 5551 3935 4161 4107 4616 4855 4405 4665 4623 4516 4794 4939 4459 4368 4640 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.02 -0.02 0.01 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.02 -0.04 -0.04 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.03 -0.01 0.09 0.14 -0.02 0.08 0.03 -0.03 -0.03 -0.05 0.00 -0.04 -0.01 0.08 -0.01 0.05 0.03 0.02 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.03 0.04 -0.03 -0.04 0.05 0.04 -0.02 0.03 0.14 0.10 0.08 0.13 0.09 -0.00 0.09 0.03 -0.01 0.03 0.02 0.01 0.03 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.01 -0.01 -0.02 -0.04 -0.07 -0.01 -0.05 0.04 -0.02 -0.03 -0.04 0.01 -0.04 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 111

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 110

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages