Detailed information of deep learning profile BP000005.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000005.1
Cell line/tissue: keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ALJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.10 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.14 0.24 -0.00 0.08 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.25 0.10 0.07 0.22 0.14 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4456 3937 3616 5215 6908 4962 3729 4508 3558 4153 4700 5013 4933 4905 4353 2989 4381 5407 1927 650 11911 1485 3220 14712 345 6267 2012 584 1114 3768 6758 2483 3333 6266 3719 5383 4293 4914 4431 4467 4824 5708 4337 4841 5212 5219 5034 4977 4931 4906 ]
C [ 4335 3241 4643 5814 3768 3733 3122 4389 7751 6366 5600 5018 4776 4288 5024 6201 4155 2285 14328 17727 1129 9916 6819 472 131 240 795 435 1757 11279 2046 8571 5521 4283 3776 3718 3721 4869 5506 6188 5462 4103 4796 4376 4232 4312 4384 4433 4583 4598 ]
G [ 4487 6119 6335 3338 4170 4284 3838 4164 2832 3284 4018 4279 4096 3768 4274 2882 5582 7425 1365 264 2195 6710 1709 2199 18152 11948 10314 17151 14131 1522 8378 5046 2506 5395 4877 4180 6989 4874 4784 3450 3651 4815 4903 4992 4687 4313 4338 4824 4804 4694 ]
T [ 5590 5571 4274 4501 4022 5889 8179 5807 4727 5065 4550 4558 5063 5907 5217 6796 4750 3751 1248 227 3633 757 7120 1485 240 413 5747 698 1866 2299 1686 2768 7508 2924 6496 5587 3865 4211 4147 4763 4931 4242 4832 4659 4737 5024 5112 4634 4550 4670 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.04 -0.03 0.03 -0.02 -0.05 0.05 -0.03 -0.03 0.12 -0.09 0.05 -0.08 -0.08 -0.07 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.03 0.07 0.06 -0.02 0.17 0.25 -0.04 0.15 0.07 -0.03 -0.05 -0.10 -0.01 -0.04 -0.04 0.16 -0.02 0.09 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.02 0.02 0.02 -0.00 0.05 0.07 -0.05 -0.04 0.09 0.07 -0.03 0.04 0.25 0.18 0.14 0.23 0.16 -0.03 0.15 0.05 -0.01 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.01 0.01 0.01 0.02 -0.01 -0.03 -0.06 -0.12 -0.03 -0.09 0.08 -0.05 -0.06 -0.09 0.02 -0.07 -0.01 -0.03 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 376

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages