Detailed information of deep learning profile BP000005.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000005.1
Cell line/tissue: keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ALJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.14 0.22 0.07 0.10 0.25 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.08 -0.00 0.24 0.14 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.10 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4670 4550 4634 5112 5024 4737 4659 4832 4242 4931 4763 4147 4211 3865 5587 6496 2924 7508 2768 1686 2299 1866 698 5747 413 240 1485 7120 757 3633 227 1248 3751 4750 6796 5217 5907 5063 4558 4550 5065 4727 5807 8179 5889 4022 4501 4274 5571 5590 ]
C [ 4694 4804 4824 4338 4313 4687 4992 4903 4815 3651 3450 4784 4874 6989 4180 4877 5395 2506 5046 8378 1522 14131 17151 10314 11948 18152 2199 1709 6710 2195 264 1365 7425 5582 2882 4274 3768 4096 4279 4018 3284 2832 4164 3838 4284 4170 3338 6335 6119 4487 ]
G [ 4598 4583 4433 4384 4312 4232 4376 4796 4103 5462 6188 5506 4869 3721 3718 3776 4283 5521 8571 2046 11279 1757 435 795 240 131 472 6819 9916 1129 17727 14328 2285 4155 6201 5024 4288 4776 5018 5600 6366 7751 4389 3122 3733 3768 5814 4643 3241 4335 ]
T [ 4906 4931 4977 5034 5219 5212 4841 4337 5708 4824 4467 4431 4914 4293 5383 3719 6266 3333 2483 6758 3768 1114 584 2012 6267 345 14712 3220 1485 11911 650 1927 5407 4381 2989 4353 4905 4933 5013 4700 4153 3558 4508 3729 4962 6908 5215 3616 3937 4456 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.03 -0.01 -0.07 0.02 -0.09 -0.06 -0.05 0.08 -0.09 -0.03 -0.12 -0.06 -0.03 -0.01 0.02 0.01 0.01 0.01 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.01 0.05 0.15 -0.03 0.16 0.23 0.14 0.18 0.25 0.04 -0.03 0.07 0.09 -0.04 -0.05 0.07 0.05 -0.00 0.02 0.02 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.09 -0.02 0.16 -0.04 -0.04 -0.01 -0.10 -0.05 -0.03 0.07 0.15 -0.04 0.25 0.17 -0.02 0.06 0.07 0.03 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.07 -0.08 -0.08 0.05 -0.09 0.12 -0.03 -0.03 0.05 -0.05 -0.02 0.03 -0.03 -0.04 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 376

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages