Detailed information of deep learning profile BP000001.1

  1. Home
  2. Deep Learning Profile > BP000001.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000001.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AHD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.12 0.03 0.05 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5633 5424 5568 6198 6000 5700 5807 5909 5275 6227 5911 4882 5279 4666 7046 8175 3408 9098 3371 1754 2440 2257 537 8076 338 329 2033 8658 1076 4492 479 1925 4559 5892 8073 6207 7042 6068 5849 5701 6178 5991 6890 8972 7060 5303 5730 5442 6576 6595 ]
C [ 5474 5816 5763 5093 5288 5719 5576 5840 5546 4161 3819 5604 5623 8481 4783 5596 6118 2474 6198 9692 1249 17877 21423 11892 14169 21875 2678 2138 8055 2560 491 1855 8884 6520 3552 5246 4556 5031 5061 4773 4223 3830 4955 4883 5023 5045 4327 7011 6925 5420 ]
G [ 5532 5405 5199 5179 5092 4947 5234 5529 4881 6299 7653 6768 5734 4418 4283 4515 5176 7236 10501 2126 14644 1628 195 591 172 84 441 7887 11340 1741 20524 16139 2863 4853 7179 5890 5128 5765 5940 6393 7194 8153 5385 4044 4557 4773 6349 5414 4042 5049 ]
T [ 6041 6035 6150 6210 6300 6314 6063 5402 6978 5993 5297 5426 6044 5115 6568 4394 7978 3872 2610 9108 4347 918 525 2121 8001 392 17528 3997 2209 13887 1186 2761 6374 5415 3876 5337 5954 5816 5830 5813 5085 4706 5450 4781 6040 7559 6274 4813 5137 5616 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.01 0.01 -0.03 0.02 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.01 0.00 0.01 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.00 0.04 0.09 -0.01 0.09 0.12 0.07 0.09 0.13 0.02 -0.01 0.04 0.05 -0.02 -0.02 0.04 0.02 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.03 0.05 -0.01 0.09 -0.01 -0.03 0.00 -0.04 -0.02 -0.01 0.04 0.08 -0.01 0.12 0.08 -0.01 0.02 0.03 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.02 0.01 -0.01 -0.04 -0.04 -0.04 0.03 -0.03 0.06 -0.01 -0.02 0.02 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 179

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages