Detailed information of deep learning profile BP000001.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000001.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AHD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.05 0.03 0.12 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5616 5137 4813 6274 7559 6040 4781 5450 4706 5085 5813 5830 5816 5954 5337 3876 5415 6374 2761 1186 13887 2209 3997 17528 392 8001 2121 525 918 4347 9108 2610 3872 7978 4394 6568 5115 6044 5426 5297 5993 6978 5402 6063 6314 6300 6210 6150 6035 6041 ]
C [ 5049 4042 5414 6349 4773 4557 4044 5385 8153 7194 6393 5940 5765 5128 5890 7179 4853 2863 16139 20524 1741 11340 7887 441 84 172 591 195 1628 14644 2126 10501 7236 5176 4515 4283 4418 5734 6768 7653 6299 4881 5529 5234 4947 5092 5179 5199 5405 5532 ]
G [ 5420 6925 7011 4327 5045 5023 4883 4955 3830 4223 4773 5061 5031 4556 5246 3552 6520 8884 1855 491 2560 8055 2138 2678 21875 14169 11892 21423 17877 1249 9692 6198 2474 6118 5596 4783 8481 5623 5604 3819 4161 5546 5840 5576 5719 5288 5093 5763 5816 5474 ]
T [ 6595 6576 5442 5730 5303 7060 8972 6890 5991 6178 5701 5849 6068 7042 6207 8073 5892 4559 1925 479 4492 1076 8658 2033 329 338 8076 537 2257 2440 1754 3371 9098 3408 8175 7046 4666 5279 4882 5911 6227 5275 5909 5807 5700 6000 6198 5568 5424 5633 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.02 -0.02 -0.01 0.06 -0.03 0.03 -0.04 -0.04 -0.04 -0.01 0.01 -0.02 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.01 0.08 0.12 -0.01 0.08 0.04 -0.01 -0.02 -0.04 0.00 -0.03 -0.01 0.09 -0.01 0.05 0.03 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.02 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.02 0.13 0.09 0.07 0.12 0.09 -0.01 0.09 0.04 -0.00 0.02 0.02 0.01 0.03 0.01 ]
T [ 0.01 0.00 0.01 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.05 0.02 -0.03 0.01 -0.01 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 179

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages