Detailed information of deep learning profile BP001387.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF280D in HEK293 using a single trained BPNet model.

Model details

Name: ZNF280D
Model ID: BP001387.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0810.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6N043  
Source: ENCSR451CYX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.02 0.04 -0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 0.02 0.01 0.02 -0.00 -0.00 0.01 -0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.02 0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 1681 168 1675 153 203 1780 1346 88 73 88 1621 76 14 267 20 17 12 8 18 52 1963 34 47 40 9 20 19 131 1838 11 2006 157 13 2018 11 10 15 16 1898 19 121 118 49 297 57 1668 93 1795 84 282 ]
C [ 110 1662 126 100 72 45 143 1541 133 1640 128 57 1379 1725 226 9 28 11 22 402 38 65 3 3 2020 19 8 1733 12 4 9 44 10 8 55 13 1996 1991 31 182 54 46 96 41 79 42 89 79 96 46 ]
G [ 145 85 147 201 1592 127 95 72 42 35 172 30 21 15 24 13 20 13 9 33 36 33 1950 2005 6 0 2025 3 200 13 20 1845 4 18 26 19 15 13 80 33 1643 1810 46 1659 39 268 142 107 62 1638 ]
T [ 120 141 108 1602 189 104 472 355 1808 293 135 1893 642 49 1786 2017 1996 2024 2007 1569 19 1924 56 8 21 2017 4 189 6 2028 21 10 2029 12 1964 2014 30 36 47 1822 238 82 1865 59 1881 78 1732 75 1814 90 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.01 0.00 -0.01 0.00 -0.00 -0.01 0.02 -0.02 0.00 0.01 -0.01 -0.01 -0.00 -0.01 0.02 -0.01 0.02 0.01 -0.01 0.02 -0.01 -0.00 -0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.01 0.01 0.01 0.02 0.02 0.01 0.01 0.01 -0.00 0.01 0.04 0.00 0.03 -0.00 0.00 0.03 -0.00 0.01 0.02 -0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.02 0.02 0.00 0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 0.00 -0.01 0.00 0.02 0.01 0.02 0.04 -0.01 0.01 0.03 -0.01 0.03 -0.00 0.01 0.02 -0.00 0.01 0.00 0.02 0.01 0.01 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.01 0.01 0.01 0.02 0.01 0.02 0.00 -0.01 0.01 0.00 -0.01 0.01 0.02 -0.00 0.02 -0.02 0.03 -0.01 -0.01 0.02 -0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 606

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 351

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 189

CWM

PFM

     

HCWM