Detailed information of deep learning profile BP001387.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF280D in HEK293 using a single trained BPNet model.

Model details

Name: ZNF280D
Model ID: BP001387.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: UN0810.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6N043  
Source: ENCSR451CYX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 0.00 0.02 0.00 0.00 0.03 0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.02 0.01 0.02 0.01 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.03 0.00 -0.00 0.04 0.02 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.02 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 -0.00 0.03 -0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.02 0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 90 1814 75 1732 78 1881 59 1865 82 238 1822 47 36 30 2014 1964 12 2029 10 21 2028 6 189 4 2017 21 8 56 1924 19 1569 2007 2024 1996 2017 1786 49 642 1893 135 293 1808 355 472 104 189 1602 108 141 120 ]
C [ 1638 62 107 142 268 39 1659 46 1810 1643 33 80 13 15 19 26 18 4 1845 20 13 200 3 2025 0 6 2005 1950 33 36 33 9 13 20 13 24 15 21 30 172 35 42 72 95 127 1592 201 147 85 145 ]
G [ 46 96 79 89 42 79 41 96 46 54 182 31 1991 1996 13 55 8 10 44 9 4 12 1733 8 19 2020 3 3 65 38 402 22 11 28 9 226 1725 1379 57 128 1640 133 1541 143 45 72 100 126 1662 110 ]
T [ 282 84 1795 93 1668 57 297 49 118 121 19 1898 16 15 10 11 2018 13 157 2006 11 1838 131 19 20 9 40 47 34 1963 52 18 8 12 17 20 267 14 76 1621 88 73 88 1346 1780 203 153 1675 168 1681 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 -0.01 0.02 -0.01 -0.01 0.03 -0.02 0.02 -0.00 0.02 0.01 -0.01 0.00 0.01 -0.01 0.00 0.02 0.01 0.02 0.01 0.01 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 0.01 0.01 0.02 0.00 0.01 -0.00 0.02 0.01 -0.00 0.03 -0.01 0.03 0.01 -0.01 0.04 0.02 0.01 0.02 0.00 -0.01 0.00 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 0.01 0.00 0.02 0.02 0.00 0.01 0.00 0.00 0.01 0.01 0.00 -0.00 0.02 0.01 -0.00 0.03 0.00 -0.00 0.03 0.00 0.04 0.01 -0.00 0.01 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.01 -0.00 -0.01 0.02 -0.01 0.01 0.02 -0.01 0.02 -0.01 -0.00 -0.01 -0.01 0.01 0.00 -0.02 0.02 -0.01 -0.00 0.00 -0.01 0.00 -0.01 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 606

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 351

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 189

CWM

PFM

     

HCWM