Detailed information of deep learning profile BP001378.1

This page shows detailed deep learning-derived predictions and motifs for ZNF416 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZNF416
Model ID: BP001378.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1979.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8NA42  
Source: ENCSR604CNJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.01 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ -0.00 0.01 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 0.01 0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

A [ 33 0 2 1 2 2 1 1 32 11 16 4 0 13 0 0 1 0 0 36 1 35 0 36 1 2 0 0 3 0 8 34 31 33 2 31 4 2 25 2 0 1 1 3 5 4 3 5 4 2 ]
C [ 1 33 0 1 1 1 32 20 1 13 0 0 0 0 0 1 34 36 36 0 0 0 1 0 0 12 0 0 0 4 19 2 3 1 32 2 0 1 2 1 2 16 14 2 0 1 2 1 2 3 ]
G [ 1 0 0 33 32 33 1 2 1 0 18 31 34 21 0 34 0 0 0 0 35 0 1 0 10 0 0 34 33 3 0 0 2 2 0 2 0 5 3 1 5 5 4 16 27 28 12 15 11 7 ]
T [ 1 3 34 1 1 0 2 13 2 12 2 1 2 2 36 1 1 0 0 0 0 1 34 0 25 22 36 2 0 29 9 0 0 0 2 1 32 28 6 32 29 14 17 15 4 3 19 15 19 24 ]

Hypothetical CWM

A [ 0.01 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 0.00 0.01 0.01 -0.00 -0.00 -0.01 -0.00 -0.00 0.00 0.00 -0.01 0.00 0.02 0.00 0.01 -0.00 0.02 0.01 -0.00 -0.01 -0.01 0.00 -0.01 -0.01 0.01 0.01 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ -0.01 0.02 0.00 0.01 0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.01 -0.00 -0.01 0.01 0.02 0.01 -0.00 0.00 -0.01 0.00 -0.01 -0.01 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.01 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 0.01 0.02 0.01 -0.01 -0.00 -0.01 -0.00 0.00 0.01 0.01 0.01 -0.00 0.02 0.00 -0.00 0.00 -0.01 0.01 -0.01 -0.01 0.00 -0.00 0.00 -0.00 0.02 0.02 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.01 0.01 -0.00 -0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 0.01 0.01 -0.01 0.00 0.00 0.01 -0.00 -0.01 0.00 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 236

1 profiles found for the same TF (ZNF416) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001377.1 ZNF416 ENCSR288NNJ WTC11 Homo sapiens MA1979.2
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