Detailed information of deep learning profile BP001375.1

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This page shows detailed deep learning-derived predictions and motifs for SP3 in HEK293 using a single trained BPNet model.

Model details

Name: SP3
Model ID: BP001375.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0746.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02447  
Source: ENCSR141PZA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.02 0.00 -0.00 -0.00 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.02 0.04 0.04 0.00 0.03 0.02 0.01 0.01 -0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2404 2489 2563 2449 2379 2452 2230 2217 2410 2190 2319 2444 2138 3010 4930 3152 1938 2487 0 2 2096 55 7 3362 1528 1470 1554 3304 2632 2610 2456 2119 2427 2477 2276 2568 2436 2353 2280 2409 2371 2457 2256 2346 2356 2364 2320 2381 2417 2368 ]
C [ 3954 3805 3883 3961 3949 4043 4144 4036 4491 4570 4317 3788 3711 3857 2486 1803 289 17 0 4 10677 15 36 267 1215 9666 6433 2495 3569 3306 3386 3695 3758 3392 3515 3612 3732 3921 3954 3726 4014 4026 4081 4126 3876 3929 4014 4002 3908 3895 ]
G [ 5341 5364 5247 5246 5409 5357 5416 5446 5004 5228 5444 5618 6126 5014 4309 7960 8710 11228 13740 13732 5 13655 12154 9326 10281 1137 2362 4110 5928 6141 6027 6099 5378 5906 6028 5618 5508 5384 5432 5595 5390 5199 5286 5132 5245 5165 5160 5128 5210 5254 ]
T [ 2041 2082 2047 2084 2003 1888 1950 2041 1835 1752 1660 1890 1765 1859 2015 825 2803 8 0 2 962 15 1543 785 716 1467 3391 3831 1611 1683 1871 1827 2177 1965 1921 1942 2064 2082 2074 2010 1965 2058 2117 2136 2263 2282 2246 2229 2205 2223 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.01 -0.02 -0.02 -0.00 -0.02 -0.03 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.01 -0.02 -0.01 -0.02 0.02 -0.01 -0.01 -0.00 0.00 0.01 0.01 ]
G [ 0.00 0.00 0.01 0.01 0.03 0.04 0.04 -0.01 0.03 0.02 0.01 0.01 -0.01 0.00 ]
T [ -0.00 -0.00 -0.01 0.00 -0.03 -0.03 -0.02 -0.01 -0.02 0.01 -0.01 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 38

CWM

PFM

     

HCWM