Detailed information of deep learning profile BP001375.1

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This page shows detailed deep learning-derived predictions and motifs for SP3 in HEK293 using a single trained BPNet model.

Model details

Name: SP3
Model ID: BP001375.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0746.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02447  
Source: ENCSR141PZA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.01 0.01 0.02 0.03 0.00 0.04 0.04 0.02 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2223 2205 2229 2246 2282 2263 2136 2117 2058 1965 2010 2074 2082 2064 1942 1921 1965 2177 1827 1871 1683 1611 3831 3391 1467 716 785 1543 15 962 2 0 8 2803 825 2015 1859 1765 1890 1660 1752 1835 2041 1950 1888 2003 2084 2047 2082 2041 ]
C [ 5254 5210 5128 5160 5165 5245 5132 5286 5199 5390 5595 5432 5384 5508 5618 6028 5906 5378 6099 6027 6141 5928 4110 2362 1137 10281 9326 12154 13655 5 13732 13740 11228 8710 7960 4309 5014 6126 5618 5444 5228 5004 5446 5416 5357 5409 5246 5247 5364 5341 ]
G [ 3895 3908 4002 4014 3929 3876 4126 4081 4026 4014 3726 3954 3921 3732 3612 3515 3392 3758 3695 3386 3306 3569 2495 6433 9666 1215 267 36 15 10677 4 0 17 289 1803 2486 3857 3711 3788 4317 4570 4491 4036 4144 4043 3949 3961 3883 3805 3954 ]
T [ 2368 2417 2381 2320 2364 2356 2346 2256 2457 2371 2409 2280 2353 2436 2568 2276 2477 2427 2119 2456 2610 2632 3304 1554 1470 1528 3362 7 55 2096 2 0 2487 1938 3152 4930 3010 2138 2444 2319 2190 2410 2217 2230 2452 2379 2449 2563 2489 2404 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.01 0.01 -0.02 -0.01 -0.02 -0.03 -0.03 0.00 -0.01 -0.00 -0.00 ]
C [ 0.00 -0.01 0.01 0.01 0.02 0.03 -0.01 0.04 0.04 0.03 0.01 0.01 0.00 0.00 ]
G [ 0.01 0.01 0.00 -0.00 -0.01 -0.01 0.02 -0.02 -0.01 -0.02 -0.01 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 -0.03 -0.02 -0.00 -0.02 -0.02 0.01 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 38

CWM

PFM

     

HCWM