Detailed information of deep learning profile BP001366.1

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This page shows detailed deep learning-derived predictions and motifs for SIX1 in HepG2 using a single trained BPNet model.

Model details

Name: SIX1
Model ID: BP001366.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: HD-SINE
JASPAR ID: MA1118.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15475  
Source: ENCSR561BQM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.02 0.01 0.01 -0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.08 0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.01 0.02 0.01 0.00 0.00 -0.00 0.00 0.01 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 0.00 -0.00 -0.00 -0.00 0.09 0.05 0.01 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 842 801 848 822 853 842 859 815 846 825 881 832 820 977 958 861 987 802 864 150 1582 5 212 2351 1048 1433 1 97 1496 0 2182 778 880 880 719 848 908 932 862 884 794 931 924 852 831 890 885 794 786 838 ]
C [ 794 820 804 788 738 883 807 815 758 781 760 797 859 823 730 881 658 685 181 91 866 1 2780 253 181 80 0 0 131 3276 524 806 856 721 787 830 757 817 839 718 810 795 739 747 807 806 764 829 829 848 ]
G [ 805 766 746 815 810 755 778 762 787 812 706 753 782 743 821 791 835 1463 1928 1516 580 0 3 566 1435 1668 3 198 113 0 121 997 616 766 731 794 833 761 760 801 768 710 726 844 826 761 809 820 807 763 ]
T [ 840 894 883 856 880 801 837 889 890 863 934 899 820 738 772 748 801 331 308 1524 253 3275 286 111 617 100 3277 2986 1541 5 454 700 929 914 1044 809 783 771 820 878 909 845 892 838 817 824 823 838 859 832 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 -0.00 0.01 -0.02 0.03 -0.03 0.00 0.03 0.02 0.03 -0.03 0.00 0.04 -0.02 0.02 0.00 0.00 0.01 ]
C [ 0.01 0.01 0.01 0.01 0.02 -0.00 -0.02 0.01 -0.03 0.05 -0.00 -0.01 -0.02 -0.04 -0.06 -0.02 0.08 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 0.02 0.03 0.03 0.01 -0.03 -0.04 0.03 0.02 0.04 -0.01 0.01 -0.01 -0.02 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 -0.00 -0.01 -0.01 0.03 -0.01 0.08 0.01 -0.02 0.00 -0.02 0.09 0.06 0.02 -0.01 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2431

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2243

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1540

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 715

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 233

CWM

PFM

     

HCWM