Detailed information of deep learning profile BP001366.1

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This page shows detailed deep learning-derived predictions and motifs for SIX1 in HepG2 using a single trained BPNet model.

Model details

Name: SIX1
Model ID: BP001366.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: HD-SINE
JASPAR ID: MA1118.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15475  
Source: ENCSR561BQM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 0.09 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 0.01 0.00 -0.00 0.00 0.00 0.01 0.02 0.01 0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 0.08 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.00 0.02 0.00 -0.00 0.01 0.01 0.02 0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 832 859 838 823 824 817 838 892 845 909 878 820 771 783 809 1044 914 929 700 454 5 1541 2986 3277 100 617 111 286 3275 253 1524 308 331 801 748 772 738 820 899 934 863 890 889 837 801 880 856 883 894 840 ]
C [ 763 807 820 809 761 826 844 726 710 768 801 760 761 833 794 731 766 616 997 121 0 113 198 3 1668 1435 566 3 0 580 1516 1928 1463 835 791 821 743 782 753 706 812 787 762 778 755 810 815 746 766 805 ]
G [ 848 829 829 764 806 807 747 739 795 810 718 839 817 757 830 787 721 856 806 524 3276 131 0 0 80 181 253 2780 1 866 91 181 685 658 881 730 823 859 797 760 781 758 815 807 883 738 788 804 820 794 ]
T [ 838 786 794 885 890 831 852 924 931 794 884 862 932 908 848 719 880 880 778 2182 0 1496 97 1 1433 1048 2351 212 5 1582 150 864 802 987 861 958 977 820 832 881 825 846 815 859 842 853 822 848 801 842 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.01 0.02 0.06 0.09 -0.02 0.00 -0.02 0.01 0.08 -0.01 0.03 -0.01 -0.01 -0.00 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.02 -0.01 0.01 -0.01 0.04 0.02 0.03 -0.04 -0.03 0.01 0.03 0.03 0.02 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 0.08 -0.02 -0.06 -0.04 -0.02 -0.01 -0.00 0.05 -0.03 0.01 -0.02 -0.00 0.02 0.01 0.01 0.01 0.01 ]
T [ 0.01 0.00 0.00 0.02 -0.02 0.04 0.00 -0.03 0.03 0.02 0.03 0.00 -0.03 0.03 -0.02 0.01 -0.00 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2431

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2243

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1540

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 763

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 715

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 233

CWM

PFM

     

HCWM