Detailed information of deep learning profile BP001355.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF652 in HepG2 using a single trained BPNet model.

Model details

Name: ZNF652
Model ID: BP001355.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1657.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y2D9  
Source: ENCSR502GAX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.12 0.16 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.14 0.05 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.09 0.12 -0.00 0.00 -0.00 0.00 -0.00 0.03 0.05 0.02 -0.00 -0.00 0.01 ]

Frequency matrix

       
A [ 2273 2342 2597 2312 2308 2286 2327 2258 2332 2364 2181 2441 2372 2639 2649 2373 2857 2660 46 18 9085 9208 42 363 1253 896 749 1512 2799 2597 1828 1488 2026 1497 1931 2685 2238 2562 2300 2305 2231 2424 2445 2277 2262 2367 2536 2434 2526 2413 ]
C [ 2216 2340 2079 2470 2378 2127 2284 2341 2199 2049 2115 1968 2084 1889 2134 2151 1903 1357 35 11 7 2 9151 6236 6890 1930 932 1300 3222 2413 1578 1817 2396 5394 3778 1821 1986 2060 2446 2344 2472 2266 2108 2150 2095 2149 2114 2292 2047 2042 ]
G [ 2203 2002 2026 1959 2064 2191 2106 2194 2202 2199 2280 1900 1915 2001 1882 1814 1786 1863 256 10 77 1 0 52 437 347 858 1374 2242 1664 2280 2789 2676 884 865 2576 2914 2270 2051 2013 2133 1975 1893 2269 2087 2006 1969 2087 2084 2219 ]
T [ 2519 2527 2509 2470 2461 2607 2494 2418 2478 2599 2635 2902 2840 2682 2546 2873 2665 3331 8874 9172 42 0 18 2560 631 6038 6672 5025 948 2537 3525 3117 2113 1436 2637 2129 2073 2319 2414 2549 2375 2546 2765 2515 2767 2689 2592 2398 2554 2537 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.01 0.02 -0.05 -0.03 0.12 0.16 -0.02 -0.03 0.01 -0.01 -0.01 0.01 0.03 0.01 -0.00 -0.00 0.01 ]
C [ 0.01 0.01 0.01 -0.01 -0.03 -0.04 -0.07 -0.05 0.14 0.07 0.05 0.01 0.00 -0.00 0.02 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.01 -0.05 -0.02 -0.05 -0.04 -0.02 0.03 0.01 -0.02 0.01 0.03 0.02 0.02 0.02 0.03 ]
T [ 0.00 0.00 0.00 0.01 0.09 0.12 -0.04 -0.06 -0.03 0.03 -0.02 0.05 0.06 0.04 -0.02 0.01 0.02 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1807

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1347

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 728

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 234

CWM

PFM

     

HCWM