Detailed information of deep learning profile BP001355.1

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This page shows detailed deep learning-derived predictions and motifs for ZNF652 in HepG2 using a single trained BPNet model.

Model details

Name: ZNF652
Model ID: BP001355.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1657.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y2D9  
Source: ENCSR502GAX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 -0.00 0.02 0.05 0.03 -0.00 0.00 -0.00 0.00 -0.00 0.12 0.09 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.05 0.14 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.16 0.12 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2537 2554 2398 2592 2689 2767 2515 2765 2546 2375 2549 2414 2319 2073 2129 2637 1436 2113 3117 3525 2537 948 5025 6672 6038 631 2560 18 0 42 9172 8874 3331 2665 2873 2546 2682 2840 2902 2635 2599 2478 2418 2494 2607 2461 2470 2509 2527 2519 ]
C [ 2219 2084 2087 1969 2006 2087 2269 1893 1975 2133 2013 2051 2270 2914 2576 865 884 2676 2789 2280 1664 2242 1374 858 347 437 52 0 1 77 10 256 1863 1786 1814 1882 2001 1915 1900 2280 2199 2202 2194 2106 2191 2064 1959 2026 2002 2203 ]
G [ 2042 2047 2292 2114 2149 2095 2150 2108 2266 2472 2344 2446 2060 1986 1821 3778 5394 2396 1817 1578 2413 3222 1300 932 1930 6890 6236 9151 2 7 11 35 1357 1903 2151 2134 1889 2084 1968 2115 2049 2199 2341 2284 2127 2378 2470 2079 2340 2216 ]
T [ 2413 2526 2434 2536 2367 2262 2277 2445 2424 2231 2305 2300 2562 2238 2685 1931 1497 2026 1488 1828 2597 2799 1512 749 896 1253 363 42 9208 9085 18 46 2660 2857 2373 2649 2639 2372 2441 2181 2364 2332 2258 2327 2286 2308 2312 2597 2342 2273 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.02 0.01 -0.02 0.04 0.06 0.05 -0.02 0.03 -0.03 -0.06 -0.04 0.12 0.09 0.01 0.00 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.02 0.03 0.01 -0.02 0.01 0.03 -0.02 -0.04 -0.05 -0.02 -0.05 0.01 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.02 -0.00 0.00 0.01 0.05 0.07 0.14 -0.05 -0.07 -0.04 -0.03 -0.01 0.01 0.01 0.01 ]
T [ 0.01 -0.00 -0.00 0.01 0.03 0.01 -0.01 -0.01 0.01 -0.03 -0.02 0.16 0.12 -0.03 -0.05 0.02 0.01 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1807

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1347

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 728

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 234

CWM

PFM

     

HCWM