Detailed information of deep learning profile BP001332.1

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This page shows detailed deep learning-derived predictions and motifs for GFI1 in HepG2 using a single trained BPNet model.

Model details

Name: GFI1
Model ID: BP001332.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0038.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99684  
Source: ENCSR849FVL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 -0.00 0.04 0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.01 -0.00 0.04 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.05 0.05 0.01 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1069 1119 1316 1122 1126 1689 1122 1073 1045 1138 1230 1748 1065 1080 1090 1482 1059 971 1523 1312 1415 1202 1995 826 365 1785 84 2042 1 4646 2 1 237 1261 1268 948 936 1800 872 1055 1006 1081 1690 1021 1007 1089 1022 1690 1137 1090 ]
C [ 1539 1335 978 967 941 972 970 959 1276 1181 961 912 938 864 1094 642 689 1321 926 994 775 829 364 197 3848 877 1331 10 5 17 6 11 313 1503 821 1424 1645 824 1643 962 922 1497 846 1477 1035 1578 1590 927 926 1574 ]
G [ 977 987 1289 1530 1551 991 1518 1565 1005 1253 1481 1035 1614 1597 1120 768 1791 849 1513 1668 978 1755 1109 3373 148 46 2829 80 4679 16 2 0 1400 894 1052 884 827 804 980 841 1645 879 1051 921 927 865 866 980 1574 920 ]
T [ 1102 1246 1104 1068 1069 1035 1077 1090 1361 1115 1015 992 1070 1146 1383 1795 1148 1546 725 713 1519 901 1219 291 326 1979 443 2555 2 8 4677 4675 2737 1029 1546 1431 1279 1259 1192 1829 1114 1230 1100 1268 1718 1155 1209 1090 1050 1103 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.01 -0.01 0.01 -0.01 0.04 -0.02 -0.02 -0.01 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.00 0.00 0.00 -0.01 0.03 0.01 0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.02 -0.01 -0.01 0.02 -0.01 0.04 0.00 -0.01 -0.03 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 0.05 0.05 0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4563

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4241

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3092

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 837

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 605

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 376

CWM

PFM

     

HCWM