Detailed information of deep learning profile BP001332.1

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This page shows detailed deep learning-derived predictions and motifs for GFI1 in HepG2 using a single trained BPNet model.

Model details

Name: GFI1
Model ID: BP001332.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0038.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q99684  
Source: ENCSR849FVL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 0.05 0.05 0.00 0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.04 -0.00 0.01 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.00 0.04 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1103 1050 1090 1209 1155 1718 1268 1100 1230 1114 1829 1192 1259 1279 1431 1546 1029 2737 4675 4677 8 2 2555 443 1979 326 291 1219 901 1519 713 725 1546 1148 1795 1383 1146 1070 992 1015 1115 1361 1090 1077 1035 1069 1068 1104 1246 1102 ]
C [ 920 1574 980 866 865 927 921 1051 879 1645 841 980 804 827 884 1052 894 1400 0 2 16 4679 80 2829 46 148 3373 1109 1755 978 1668 1513 849 1791 768 1120 1597 1614 1035 1481 1253 1005 1565 1518 991 1551 1530 1289 987 977 ]
G [ 1574 926 927 1590 1578 1035 1477 846 1497 922 962 1643 824 1645 1424 821 1503 313 11 6 17 5 10 1331 877 3848 197 364 829 775 994 926 1321 689 642 1094 864 938 912 961 1181 1276 959 970 972 941 967 978 1335 1539 ]
T [ 1090 1137 1690 1022 1089 1007 1021 1690 1081 1006 1055 872 1800 936 948 1268 1261 237 1 2 4646 1 2042 84 1785 365 826 1995 1202 1415 1312 1523 971 1059 1482 1090 1080 1065 1748 1230 1138 1045 1073 1122 1689 1126 1122 1316 1119 1069 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 0.02 0.05 0.05 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 -0.03 -0.01 0.00 0.04 -0.01 0.02 -0.01 -0.01 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 0.01 0.01 0.03 -0.01 0.00 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.00 0.01 -0.01 -0.02 -0.02 0.04 -0.01 0.01 -0.01 0.01 -0.00 0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4563

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4241

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3092

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 837

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 605

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 466

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 376

CWM

PFM

     

HCWM